Mass-spectrometry-based draft of the Arabidopsis proteome

Julia Mergner, Martin Frejno, Markus List, Michael Papacek, Xia Chen, Ajeet Chaudhary, Patroklos Samaras, Sandra Richter, Hiromasa Shikata, Maxim Messerer, Daniel Lang, Stefan Altmann, Philipp Cyprys, Daniel P. Zolg, Toby Mathieson, Marcus Bantscheff, Rashmi R. Hazarika, Tobias Schmidt, Corinna Dawid, Andreas Dunkel, Thomas Hofmann, Stefanie Sprunck, Pascal Falter-Braun, Frank Johannes, Klaus F. X. Mayer, Gerd Jürgens, Mathias Wilhelm, Jan Baumbach, Erwin Grill, Kay Schneitz, Claus Schwechheimer and Bernhard Kuster ()
Additional contact information
Julia Mergner: Technical University of Munich (TUM)
Martin Frejno: Technical University of Munich (TUM)
Markus List: Technical University of Munich (TUM)
Michael Papacek: Technical University of Munich (TUM)
Xia Chen: Technical University of Munich (TUM)
Ajeet Chaudhary: Technical University of Munich (TUM)
Patroklos Samaras: Technical University of Munich (TUM)
Sandra Richter: University of Tübingen
Hiromasa Shikata: Technical University of Munich (TUM)
Maxim Messerer: German Research Center for Environmental Health
Daniel Lang: German Research Center for Environmental Health
Stefan Altmann: German Research Center for Environmental Health
Philipp Cyprys: University of Regensburg
Daniel P. Zolg: Technical University of Munich (TUM)
Toby Mathieson: Cellzome GmbH
Marcus Bantscheff: Cellzome GmbH
Rashmi R. Hazarika: Technical University of Munich (TUM)
Tobias Schmidt: Technical University of Munich (TUM)
Corinna Dawid: Technical University of Munich (TUM)
Andreas Dunkel: Technical University of Munich (TUM)
Thomas Hofmann: Technical University of Munich (TUM)
Stefanie Sprunck: University of Regensburg
Pascal Falter-Braun: German Research Center for Environmental Health
Frank Johannes: Technical University of Munich (TUM)
Klaus F. X. Mayer: German Research Center for Environmental Health
Gerd Jürgens: University of Tübingen
Mathias Wilhelm: Technical University of Munich (TUM)
Jan Baumbach: Technical University of Munich (TUM)
Erwin Grill: Technical University of Munich (TUM)
Kay Schneitz: Technical University of Munich (TUM)
Claus Schwechheimer: Technical University of Munich (TUM)
Bernhard Kuster: Technical University of Munich (TUM)

Nature, 2020, vol. 579, issue 7799, 409-414

Abstract: Abstract Plants are essential for life and are extremely diverse organisms with unique molecular capabilities1. Here we present a quantitative atlas of the transcriptomes, proteomes and phosphoproteomes of 30 tissues of the model plant Arabidopsis thaliana. Our analysis provides initial answers to how many genes exist as proteins (more than 18,000), where they are expressed, in which approximate quantities (a dynamic range of more than six orders of magnitude) and to what extent they are phosphorylated (over 43,000 sites). We present examples of how the data may be used, such as to discover proteins that are translated from short open-reading frames, to uncover sequence motifs that are involved in the regulation of protein production, and to identify tissue-specific protein complexes or phosphorylation-mediated signalling events. Interactive access to this resource for the plant community is provided by the ProteomicsDB and ATHENA databases, which include powerful bioinformatics tools to explore and characterize Arabidopsis proteins, their modifications and interactions.

Date: 2020
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DOI: 10.1038/s41586-020-2094-2

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