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Genomic insights into the formation of human populations in East Asia

Chuan-Chao Wang (), Hui-Yuan Yeh, Alexander N. Popov, Hu-Qin Zhang, Hirofumi Matsumura, Kendra Sirak, Olivia Cheronet, Alexey Kovalev, Nadin Rohland, Alexander M. Kim, Swapan Mallick, Rebecca Bernardos, Dashtseveg Tumen, Jing Zhao, Yi-Chang Liu, Jiun-Yu Liu, Matthew Mah, Ke Wang, Zhao Zhang, Nicole Adamski, Nasreen Broomandkhoshbacht, Kimberly Callan, Francesca Candilio, Kellie Sara Duffett Carlson, Brendan J. Culleton, Laurie Eccles, Suzanne Freilich, Denise Keating, Ann Marie Lawson, Kirsten Mandl, Megan Michel, Jonas Oppenheimer, Kadir Toykan Özdoğan, Kristin Stewardson, Shaoqing Wen, Shi Yan, Fatma Zalzala, Richard Chuang, Ching-Jung Huang, Hana Looh, Chung-Ching Shiung, Yuri G. Nikitin, Andrei V. Tabarev, Alexey A. Tishkin, Song Lin, Zhou-Yong Sun, Xiao-Ming Wu, Tie-Lin Yang, Xi Hu, Liang Chen, Hua Du, Jamsranjav Bayarsaikhan, Enkhbayar Mijiddorj, Diimaajav Erdenebaatar, Tumur-Ochir Iderkhangai, Erdene Myagmar, Hideaki Kanzawa-Kiriyama, Masato Nishino, Ken-ichi Shinoda, Olga A. Shubina, Jianxin Guo, Wangwei Cai, Qiongying Deng, Longli Kang, Dawei Li, Dongna Li, Rong Lin, Nini, Rukesh Shrestha, Ling-Xiang Wang, Lanhai Wei, Guangmao Xie, Hongbing Yao, Manfei Zhang, Guanglin He, Xiaomin Yang, Rong Hu, Martine Robbeets, Stephan Schiffels, Douglas J. Kennett, Li Jin, Hui Li, Johannes Krause (), Ron Pinhasi () and David Reich ()
Additional contact information
Chuan-Chao Wang: Xiamen University
Hui-Yuan Yeh: Nanyang Technological University
Alexander N. Popov: Far Eastern Federal University
Hu-Qin Zhang: Xi’an Jiaotong University
Hirofumi Matsumura: Sapporo Medical University
Kendra Sirak: Harvard Medical School
Olivia Cheronet: University of Vienna
Alexey Kovalev: Russian Academy of Sciences
Nadin Rohland: Harvard Medical School
Alexander M. Kim: Harvard Medical School
Swapan Mallick: Harvard Medical School
Rebecca Bernardos: Harvard Medical School
Dashtseveg Tumen: National University of Mongolia
Jing Zhao: Xi’an Jiaotong University
Yi-Chang Liu: National Cheng Kung University
Jiun-Yu Liu: University of Washington
Matthew Mah: Harvard Medical School
Ke Wang: Max Planck Institute for the Science of Human History
Zhao Zhang: Harvard Medical School
Nicole Adamski: Harvard Medical School
Nasreen Broomandkhoshbacht: Harvard Medical School
Kimberly Callan: Harvard Medical School
Francesca Candilio: University of Vienna
Kellie Sara Duffett Carlson: University of Vienna
Brendan J. Culleton: The Pennsylvania State University
Laurie Eccles: Pennsylvania State University
Suzanne Freilich: University of Vienna
Denise Keating: University of Vienna
Ann Marie Lawson: Harvard Medical School
Kirsten Mandl: University of Vienna
Megan Michel: Harvard Medical School
Jonas Oppenheimer: Harvard Medical School
Kadir Toykan Özdoğan: University of Vienna
Kristin Stewardson: Harvard Medical School
Shaoqing Wen: Fudan University
Shi Yan: Minzu University of China
Fatma Zalzala: Harvard Medical School
Richard Chuang: National Cheng Kung University
Ching-Jung Huang: National Cheng Kung University
Hana Looh: Institute of History and Philology, Academia Sinica
Chung-Ching Shiung: National Cheng Kung University
Yuri G. Nikitin: Archaeology and Ethnology, Far Eastern Branch of the Russian Academy of Sciences
Andrei V. Tabarev: Siberian Branch of Russian Academy of Sciences
Alexey A. Tishkin: Altai State University
Song Lin: Xi’an Jiaotong University
Zhou-Yong Sun: Shaanxi Provincial Institute of Archaeology
Xiao-Ming Wu: Xi’an Jiaotong University
Tie-Lin Yang: Xi’an Jiaotong University
Xi Hu: Xi’an Jiaotong University
Liang Chen: Northwest University
Hua Du: Xi’an AMS Center, Institute of Earth Environment, Chinese Academy of Sciences
Jamsranjav Bayarsaikhan: Research Center at the National Museum of Mongolia
Enkhbayar Mijiddorj: Ulaanbaatar State University
Diimaajav Erdenebaatar: Ulaanbaatar State University
Tumur-Ochir Iderkhangai: Ulaanbaatar State University
Erdene Myagmar: National University of Mongolia
Hideaki Kanzawa-Kiriyama: National Museum of Nature and Science
Masato Nishino: Archaeological Center of Chiba City
Ken-ichi Shinoda: National Museum of Nature and Science
Olga A. Shubina: Sakhalin Regional Museum
Jianxin Guo: Xiamen University
Wangwei Cai: Hainan Medical University
Qiongying Deng: Guangxi Medical University
Longli Kang: Xizang Minzu University (Tibet University for Nationalities)
Dawei Li: Guangxi University for Nationalities
Dongna Li: Hainan Medical University
Rong Lin: Hainan Medical University
Nini: Xizang Minzu University (Tibet University for Nationalities)
Rukesh Shrestha: Fudan University
Ling-Xiang Wang: Fudan University
Lanhai Wei: Xiamen University
Guangmao Xie: Guangxi Normal University
Hongbing Yao: Gansu Institute of Political Science and Law
Manfei Zhang: Fudan University
Guanglin He: Xiamen University
Xiaomin Yang: Xiamen University
Rong Hu: Xiamen University
Martine Robbeets: Max Planck Institute for the Science of Human History
Stephan Schiffels: Max Planck Institute for the Science of Human History
Douglas J. Kennett: University of California Santa Barbara
Li Jin: Fudan University
Hui Li: Fudan University
Johannes Krause: Max Planck Institute for the Science of Human History
Ron Pinhasi: University of Vienna
David Reich: Harvard Medical School

Nature, 2021, vol. 591, issue 7850, 413-419

Abstract: Abstract The deep population history of East Asia remains poorly understood owing to a lack of ancient DNA data and sparse sampling of present-day people1,2. Here we report genome-wide data from 166 East Asian individuals dating to between 6000 bc and ad 1000 and 46 present-day groups. Hunter-gatherers from Japan, the Amur River Basin, and people of Neolithic and Iron Age Taiwan and the Tibetan Plateau are linked by a deeply splitting lineage that probably reflects a coastal migration during the Late Pleistocene epoch. We also follow expansions during the subsequent Holocene epoch from four regions. First, hunter-gatherers from Mongolia and the Amur River Basin have ancestry shared by individuals who speak Mongolic and Tungusic languages, but do not carry ancestry characteristic of farmers from the West Liao River region (around 3000 bc), which contradicts theories that the expansion of these farmers spread the Mongolic and Tungusic proto-languages. Second, farmers from the Yellow River Basin (around 3000 bc) probably spread Sino-Tibetan languages, as their ancestry dispersed both to Tibet—where it forms approximately 84% of the gene pool in some groups—and to the Central Plain, where it has contributed around 59–84% to modern Han Chinese groups. Third, people from Taiwan from around 1300 bc to ad 800 derived approximately 75% of their ancestry from a lineage that is widespread in modern individuals who speak Austronesian, Tai–Kadai and Austroasiatic languages, and that we hypothesize derives from farmers of the Yangtze River Valley. Ancient people from Taiwan also derived about 25% of their ancestry from a northern lineage that is related to, but different from, farmers of the Yellow River Basin, which suggests an additional north-to-south expansion. Fourth, ancestry from Yamnaya Steppe pastoralists arrived in western Mongolia after around 3000 bc but was displaced by previously established lineages even while it persisted in western China, as would be expected if this ancestry was associated with the spread of proto-Tocharian Indo-European languages. Two later gene flows affected western Mongolia: migrants after around 2000 bc with Yamnaya and European farmer ancestry, and episodic influences of later groups with ancestry from Turan.

Date: 2021
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Citations: View citations in EconPapers (4)

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DOI: 10.1038/s41586-021-03336-2

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