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Non-viral precision T cell receptor replacement for personalized cell therapy

Susan P. Foy (), Kyle Jacoby, Daniela A. Bota, Theresa Hunter, Zheng Pan, Eric Stawiski, Yan Ma, William Lu, Songming Peng, Clifford L. Wang, Benjamin Yuen, Olivier Dalmas, Katharine Heeringa, Barbara Sennino, Andy Conroy, Michael T. Bethune, Ines Mende, William White, Monica Kukreja, Swetha Gunturu, Emily Humphrey, Adeel Hussaini, Duo An, Adam J. Litterman, Boi Bryant Quach, Alphonsus H. C. Ng, Yue Lu, Chad Smith, Katie M. Campbell, Daniel Anaya, Lindsey Skrdlant, Eva Yi-Hsuan Huang, Ventura Mendoza, Jyoti Mathur, Luke Dengler, Bhamini Purandare, Robert Moot, Michael C. Yi, Roel Funke, Alison Sibley, Todd Stallings-Schmitt, David Y. Oh, Bartosz Chmielowski, Mehrdad Abedi, Yuan Yuan, Jeffrey A. Sosman, Sylvia M. Lee, Adam J. Schoenfeld, David Baltimore, James R. Heath, Alex Franzusoff, Antoni Ribas (), Arati V. Rao and Stefanie J. Mandl ()
Additional contact information
Susan P. Foy: PACT Pharma
Kyle Jacoby: PACT Pharma
Daniela A. Bota: University of California
Theresa Hunter: PACT Pharma
Zheng Pan: PACT Pharma
Eric Stawiski: PACT Pharma
Yan Ma: PACT Pharma
William Lu: PACT Pharma
Songming Peng: PACT Pharma
Clifford L. Wang: PACT Pharma
Benjamin Yuen: PACT Pharma
Olivier Dalmas: PACT Pharma
Katharine Heeringa: PACT Pharma
Barbara Sennino: PACT Pharma
Andy Conroy: PACT Pharma
Michael T. Bethune: PACT Pharma
Ines Mende: PACT Pharma
William White: PACT Pharma
Monica Kukreja: PACT Pharma
Swetha Gunturu: PACT Pharma
Emily Humphrey: PACT Pharma
Adeel Hussaini: PACT Pharma
Duo An: PACT Pharma
Adam J. Litterman: PACT Pharma
Boi Bryant Quach: PACT Pharma
Alphonsus H. C. Ng: Institute for Systems Biology
Yue Lu: Institute for Systems Biology
Chad Smith: PACT Pharma
Katie M. Campbell: University of California, Los Angeles (UCLA)
Daniel Anaya: PACT Pharma
Lindsey Skrdlant: PACT Pharma
Eva Yi-Hsuan Huang: PACT Pharma
Ventura Mendoza: PACT Pharma
Jyoti Mathur: PACT Pharma
Luke Dengler: PACT Pharma
Bhamini Purandare: PACT Pharma
Robert Moot: PACT Pharma
Michael C. Yi: PACT Pharma
Roel Funke: PACT Pharma
Alison Sibley: PACT Pharma
Todd Stallings-Schmitt: PACT Pharma
David Y. Oh: University of California
Bartosz Chmielowski: University of California, Los Angeles (UCLA)
Mehrdad Abedi: University of California Davis Comprehensive Cancer Center
Yuan Yuan: City of Hope National Medical Center
Jeffrey A. Sosman: Northwestern University
Sylvia M. Lee: Fred Hutchinson Cancer Research Center
Adam J. Schoenfeld: Weill Cornell Medical College
David Baltimore: California Institute of Technology
James R. Heath: Institute for Systems Biology
Alex Franzusoff: PACT Pharma
Antoni Ribas: University of California, Los Angeles (UCLA)
Arati V. Rao: PACT Pharma
Stefanie J. Mandl: PACT Pharma

Nature, 2023, vol. 615, issue 7953, 687-696

Abstract: Abstract T cell receptors (TCRs) enable T cells to specifically recognize mutations in cancer cells1–3. Here we developed a clinical-grade approach based on CRISPR–Cas9 non-viral precision genome-editing to simultaneously knockout the two endogenous TCR genes TRAC (which encodes TCRα) and TRBC (which encodes TCRβ). We also inserted into the TRAC locus two chains of a neoantigen-specific TCR (neoTCR) isolated from circulating T cells of patients. The neoTCRs were isolated using a personalized library of soluble predicted neoantigen–HLA capture reagents. Sixteen patients with different refractory solid cancers received up to three distinct neoTCR transgenic cell products. Each product expressed a patient-specific neoTCR and was administered in a cell-dose-escalation, first-in-human phase I clinical trial ( NCT03970382 ). One patient had grade 1 cytokine release syndrome and one patient had grade 3 encephalitis. All participants had the expected side effects from the lymphodepleting chemotherapy. Five patients had stable disease and the other eleven had disease progression as the best response on the therapy. neoTCR transgenic T cells were detected in tumour biopsy samples after infusion at frequencies higher than the native TCRs before infusion. This study demonstrates the feasibility of isolating and cloning multiple TCRs that recognize mutational neoantigens. Moreover, simultaneous knockout of the endogenous TCR and knock-in of neoTCRs using single-step, non-viral precision genome-editing are achieved. The manufacture of neoTCR engineered T cells at clinical grade, the safety of infusing up to three gene-edited neoTCR T cell products and the ability of the transgenic T cells to traffic to the tumours of patients are also demonstrated.

Date: 2023
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Citations: View citations in EconPapers (4)

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DOI: 10.1038/s41586-022-05531-1

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