Extreme dynamics in a biomolecular condensate

Nicola Galvanetto (), Miloš T. Ivanović (), Aritra Chowdhury, Andrea Sottini, Mark F. Nüesch, Daniel Nettels, Robert B. Best () and Benjamin Schuler ()
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Nicola Galvanetto: University of Zurich
Miloš T. Ivanović: University of Zurich
Aritra Chowdhury: University of Zurich
Andrea Sottini: University of Zurich
Mark F. Nüesch: University of Zurich
Daniel Nettels: University of Zurich
Robert B. Best: National Institutes of Health
Benjamin Schuler: University of Zurich

Nature, 2023, vol. 619, issue 7971, 876-883

Abstract: Abstract Proteins and nucleic acids can phase-separate in the cell to form concentrated biomolecular condensates1–4. The functions of condensates span many length scales: they modulate interactions and chemical reactions at the molecular scale5, organize biochemical processes at the mesoscale6 and compartmentalize cells4. Understanding the underlying mechanisms of these processes will require detailed knowledge of the rich dynamics across these scales7. The mesoscopic dynamics of biomolecular condensates have been extensively characterized8, but their behaviour at the molecular scale has remained more elusive. Here, as an example of biomolecular phase separation, we study complex coacervates of two highly and oppositely charged disordered human proteins9. Their dense phase is 1,000 times more concentrated than the dilute phase, and the resulting percolated interaction network10 leads to a bulk viscosity 300 times greater than that of water. However, single-molecule spectroscopy optimized for measurements within individual droplets reveals that at the molecular scale, the disordered proteins remain exceedingly dynamic, with their chain configurations interconverting on submicrosecond timescales. Massive all-atom molecular dynamics simulations reproduce the experimental observations and explain this apparent discrepancy: the underlying interactions between individual charged side chains are short-lived and exchange on a pico- to nanosecond timescale. Our results indicate that, despite the high macroscopic viscosity of phase-separated systems, local biomolecular rearrangements required for efficient reactions at the molecular scale can remain rapid.

Date: 2023
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DOI: 10.1038/s41586-023-06329-5

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