Structure and assembly of a bacterial gasdermin pore

Alex G. Johnson (), Megan L. Mayer, Stefan L. Schaefer, Nora K. McNamara-Bordewick, Gerhard Hummer and Philip J. Kranzusch ()
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Alex G. Johnson: Harvard Medical School
Megan L. Mayer: Harvard Medical School
Stefan L. Schaefer: Max Planck Institute of Biophysics
Nora K. McNamara-Bordewick: Dana-Farber Cancer Institute
Gerhard Hummer: Max Planck Institute of Biophysics
Philip J. Kranzusch: Harvard Medical School

Nature, 2024, vol. 628, issue 8008, 657-663

Abstract: Abstract In response to pathogen infection, gasdermin (GSDM) proteins form membrane pores that induce a host cell death process called pyroptosis1–3. Studies of human and mouse GSDM pores have revealed the functions and architectures of assemblies comprising 24 to 33 protomers4–9, but the mechanism and evolutionary origin of membrane targeting and GSDM pore formation remain unknown. Here we determine a structure of a bacterial GSDM (bGSDM) pore and define a conserved mechanism of pore assembly. Engineering a panel of bGSDMs for site-specific proteolytic activation, we demonstrate that diverse bGSDMs form distinct pore sizes that range from smaller mammalian-like assemblies to exceptionally large pores containing more than 50 protomers. We determine a cryo-electron microscopy structure of a Vitiosangium bGSDM in an active ‘slinky’-like oligomeric conformation and analyse bGSDM pores in a native lipid environment to create an atomic-level model of a full 52-mer bGSDM pore. Combining our structural analysis with molecular dynamics simulations and cellular assays, our results support a stepwise model of GSDM pore assembly and suggest that a covalently bound palmitoyl can leave a hydrophobic sheath and insert into the membrane before formation of the membrane-spanning β-strand regions. These results reveal the diversity of GSDM pores found in nature and explain the function of an ancient post-translational modification in enabling programmed host cell death.

Date: 2024
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DOI: 10.1038/s41586-024-07216-3

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