Human-correlated genetic models identify precision therapy for liver cancer
Miryam Müller (),
Stephanie May,
Holly Hall,
Timothy J. Kendall,
Lynn McGarry,
Lauriane Blukacz,
Sandro Nuciforo,
Anastasia Georgakopoulou,
Thomas Jamieson,
Narisa Phinichkusolchit,
Sandeep Dhayade,
Toshiyasu Suzuki,
Júlia Huguet-Pradell,
Ian R. Powley,
Leah Officer-Jones,
Rachel L. Pennie,
Roger Esteban-Fabró,
Albert Gris-Oliver,
Roser Pinyol,
George L. Skalka,
Jack Leslie,
Matthew Hoare,
Joep Sprangers,
Gaurav Malviya,
Agata Mackintosh,
Emma Johnson,
Misti McCain,
John Halpin,
Christos Kiourtis,
Colin Nixon,
Graeme Clark,
William Clark,
Robin Shaw,
Ann Hedley,
Thomas M. Drake,
Ee Hong Tan,
Matt Neilson,
Daniel J. Murphy,
David Y. Lewis,
Helen L. Reeves,
John Quesne,
Derek A. Mann,
Leo M. Carlin,
Karen Blyth,
Josep M. Llovet,
Markus H. Heim,
Owen J. Sansom,
Crispin J. Miller and
Thomas G. Bird ()
Additional contact information
Miryam Müller: Cancer Research UK Scotland Institute
Stephanie May: Cancer Research UK Scotland Institute
Holly Hall: Cancer Research UK Scotland Institute
Timothy J. Kendall: University of Edinburgh
Lynn McGarry: Cancer Research UK Scotland Institute
Lauriane Blukacz: University Hospital and University of Basel
Sandro Nuciforo: University Hospital and University of Basel
Anastasia Georgakopoulou: Cancer Research UK Scotland Institute
Thomas Jamieson: Cancer Research UK Scotland Institute
Narisa Phinichkusolchit: Cancer Research UK Scotland Institute
Sandeep Dhayade: Cancer Research UK Scotland Institute
Toshiyasu Suzuki: Cancer Research UK Scotland Institute
Júlia Huguet-Pradell: Universitat de Barcelona
Ian R. Powley: Cancer Research UK Scotland Institute
Leah Officer-Jones: Cancer Research UK Scotland Institute
Rachel L. Pennie: Cancer Research UK Scotland Institute
Roger Esteban-Fabró: Universitat de Barcelona
Albert Gris-Oliver: Universitat de Barcelona
Roser Pinyol: Universitat de Barcelona
George L. Skalka: Cancer Research UK Scotland Institute
Jack Leslie: Newcastle University
Matthew Hoare: University of Cambridge
Joep Sprangers: Cancer Research UK Scotland Institute
Gaurav Malviya: Cancer Research UK Scotland Institute
Agata Mackintosh: Cancer Research UK Scotland Institute
Emma Johnson: Cancer Research UK Scotland Institute
Misti McCain: Newcastle University
John Halpin: Cancer Research UK Scotland Institute
Christos Kiourtis: Cancer Research UK Scotland Institute
Colin Nixon: Cancer Research UK Scotland Institute
Graeme Clark: Cancer Research UK Scotland Institute
William Clark: Cancer Research UK Scotland Institute
Robin Shaw: Cancer Research UK Scotland Institute
Ann Hedley: Cancer Research UK Scotland Institute
Thomas M. Drake: Cancer Research UK Scotland Institute
Ee Hong Tan: Cancer Research UK Scotland Institute
Matt Neilson: Cancer Research UK Scotland Institute
Daniel J. Murphy: Cancer Research UK Scotland Institute
David Y. Lewis: Cancer Research UK Scotland Institute
Helen L. Reeves: Newcastle University
John Quesne: Cancer Research UK Scotland Institute
Derek A. Mann: Newcastle University
Leo M. Carlin: Cancer Research UK Scotland Institute
Karen Blyth: Cancer Research UK Scotland Institute
Josep M. Llovet: Universitat de Barcelona
Markus H. Heim: University Hospital and University of Basel
Owen J. Sansom: Cancer Research UK Scotland Institute
Crispin J. Miller: Cancer Research UK Scotland Institute
Thomas G. Bird: Cancer Research UK Scotland Institute
Nature, 2025, vol. 639, issue 8055, 754-764
Abstract:
Abstract Hepatocellular carcinoma (HCC), the most common form of primary liver cancer, is a leading cause of cancer-related mortality worldwide1,2. HCC occurs typically from a background of chronic liver disease, caused by a spectrum of predisposing conditions. Tumour development is driven by the expansion of clones that accumulate progressive driver mutations3, with hepatocytes the most likely cell of origin2. However, the landscape of driver mutations in HCC is broadly independent of the underlying aetiologies4. Despite an increasing range of systemic treatment options for advanced HCC, outcomes remain heterogeneous and typically poor. Emerging data suggest that drug efficacies depend on disease aetiology and genetic alterations5,6. Exploring subtypes in preclinical models with human relevance will therefore be essential to advance precision medicine in HCC7. Here we generated a suite of genetically driven immunocompetent in vivo and matched in vitro HCC models. Our models represent multiple features of human HCC, including clonal origin, histopathological appearance and metastasis. We integrated transcriptomic data from the mouse models with human HCC data and identified four common human–mouse subtype clusters. The subtype clusters had distinct transcriptomic characteristics that aligned with the human histopathology. In a proof-of-principle analysis, we verified response to standard-of-care treatment and used a linked in vitro–in vivo pipeline to identify a promising therapeutic candidate, cladribine, that has not previously been linked to HCC treatment. Cladribine acts in a highly effective subtype-specific manner in combination with standard-of-care therapy.
Date: 2025
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DOI: 10.1038/s41586-025-08585-z
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