Programmable protein ligation on cell surfaces

Christian Kofoed, Girum Erkalo, Nicholas E. S. Tay, Xuanjia Ye, Yutong Lin and Tom W. Muir ()
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Christian Kofoed: Princeton University
Girum Erkalo: Princeton University
Nicholas E. S. Tay: Princeton University
Xuanjia Ye: Princeton University
Yutong Lin: Princeton University
Tom W. Muir: Princeton University

Nature, 2025, vol. 645, issue 8081, 793-800

Abstract: Abstract The surface landscapes of cells differ as a function of cell type and are frequently altered in disease contexts1–3. Exploiting such differences is key to many therapeutic strategies and is the basis for developing diagnostic and basic-science tools. State-of-the-art strategies typically target single surface antigens, but each individual receptor rarely defines the specific cell type4,5. The development of programmable molecular systems that integrate multiple cell-surface features to convert on-target inputs to user-defined outputs is therefore highly desirable. Here we describe an autonomous decision-making device driven by proximity-gated protein trans-splicing that allows local generation of an active protein from two otherwise inactive polypeptide fragments. We show that this protein-actuator platform can perform convergent protein ligation on designated cell surfaces, allowing highly selective generation of active proteins, which can either remain physically associated with the cell surface on which they were manufactured or be released into the surrounding milieu. Because of its intrinsic modularity and tunability, we demonstrate that the technology is compatible with different types of input, targeting modality and functional output, allowing for the localized interrogation or manipulation of cellular systems.

Date: 2025
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DOI: 10.1038/s41586-025-09287-2

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