Journal of Agricultural, Biological and Environmental Statistics

2016 - 2017

Current editor(s): Stephen Buckland

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Springer
The International Biometric Society
American Statistical Association
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2017, volume 22, issue 3

Biometrics, JABES and the International Biometric Society pp. 221-223

Elizabeth Thompson, Marie Davidian and Stephen Buckland

Guest Editor’s Introduction to the Special Issue on “Animal Movement Modeling” pp. 224-231

Mevin B. Hooten, Ruth King and Roland Langrock

Multi-scale Modeling of Animal Movement and General Behavior Data Using Hidden Markov Models with Hierarchical Structures pp. 232-248

Vianey Leos-Barajas, Eric J. Gangloff, Timo Adam, Roland Langrock, Floris M. Beest, Jacob Nabe-Nielsen and Juan M. Morales

Incorporating Telemetry Error into Hidden Markov Models of Animal Movement Using Multiple Imputation pp. 249-269

Brett T. McClintock

Selecting the Number of States in Hidden Markov Models: Pragmatic Solutions Illustrated Using Animal Movement pp. 270-293

Jennifer Pohle, Roland Langrock, Floris M. Beest and Niels Martin Schmidt

Hierarchical Nonlinear Spatio-temporal Agent-Based Models for Collective Animal Movement pp. 294-312

Patrick L. McDermott, Christopher K. Wikle and Joshua Millspaugh

Modeling Collective Animal Movement Through Interactions in Behavioral States pp. 313-334

James C. Russell, Ephraim M. Hanks, Andreas P. Modlmeier and David P. Hughes

Imputation Approaches for Animal Movement Modeling pp. 335-352

Henry Scharf, Mevin B. Hooten and Devin S. Johnson

Reflected Stochastic Differential Equation Models for Constrained Animal Movement pp. 353-372

Ephraim M. Hanks, Devin S. Johnson and Mevin B. Hooten

Bayesian Inference for Multistate ‘Step and Turn’ Animal Movement in Continuous Time pp. 373-392

A. Parton and P. G. Blackwell

A General Approach to Model Movement in (Highly) Fragmented Patch Networks pp. 393-412

Juan Manuel Morales, Agustina Virgilio, María Delgado and Otso Ovaskainen

Erratum to: On Estimation and Selection of Autologistic Regression Models via Penalized Pseudolikelihood pp. 413-419

Rao Fu, Andrew L. Thurman, Tingjin Chu, Michelle M. Steen-adams and Jun Zhu

José-María Montero, Gema Fernández-Avilés, and Jorge Mateu: Spatial and Spatio-Temporal Geostatistical Modeling and Kriging pp. 420-422

Christopher K. Wikle

Animal Movement: Statistical Models for Telemetry Data by Hooten, Johnson, McClintock and Morales pp. 423-425

Jason Matthiopoulos

2017, volume 22, issue 2

Bayesian Methods for Estimating Animal Abundance at Large Spatial Scales Using Data from Multiple Sources pp. 111-139

Soumen Dey, Mohan Delampady, Ravishankar Parameshwaran, N. Samba Kumar, Arjun Srivathsa and K. Ullas Karanth

Bringing It All Together: Multi-species Integrated Population Modelling of a Breeding Community pp. 140-160

José J. Lahoz-Monfort, Michael P. Harris, Sarah Wanless, Stephen N. Freeman and Byron J. T. Morgan

A Statistical Method to Construct Confidence Sets on Carrion Insect Age from Development Stage pp. 161-171

Lynn R. LaMotte, Amanda L. Roe, Jeffrey D. Wells and Leon G. Higley

Application of Whole-Genome Prediction Methods for Genome-Wide Association Studies: A Bayesian Approach pp. 172-193

Rohan Fernando, Ali Toosi, Anna Wolc, Dorian Garrick and Jack Dekkers

Water flow probabilistic predictions based on a rainfall–runoff simulator: a two-regime model with variable selection pp. 194-219

Marie Courbariaux, Pierre Barbillon and Éric Parent

2017, volume 22, issue 1

Residual Variance–Covariance Modelling in Analysis of Multivariate Data from Variety Selection Trials pp. 1-22

Joanne De Faveri, Arūnas P. Verbyla, Brian R. Cullis, Wayne S. Pitchford and Robin Thompson

Smooth additive mixed models for predicting aboveground biomass pp. 23-41

Mariola Sánchez-González, María Durbán, Dae-Jin Lee, Isabel Cañellas and Hortensia Sixto

The Bayesian Group Lasso for Confounded Spatial Data pp. 42-59

Trevor J. Hefley, Mevin B. Hooten, Ephraim M. Hanks, Robin E. Russell and Daniel P. Walsh

Functional Mapping of Multiple Dynamic Traits pp. 60-75

Jiguo Cao, Liangliang Wang, Zhongwen Huang, Junyi Gai and Rongling Wu

Comparison of Models Analyzing a Small Number of Observed Meningitis Cases in Navrongo, Ghana pp. 76-104

Y. Hagar, M. Hayden, C. Wiedinmyer and V. Dukic

“Extending R”, by John M. Chambers pp. 105-106

Edzer Pebesma

EnvStats: An R Package for Environmental Statistics by Steven P. Millard pp. 107-108

Peter F. Craigmile

Hidden Markov Models for Time Series: An Introduction Using R, 2nd Edition, by Walter Zucchini, Iain L. MacDonald, and Roland Langrock pp. 109-110

Leo Polansky

2016, volume 21, issue 4

Assessing the Correlation Structure in Cow Udder Quarter Infection Times Through Extensions of the Correlated Frailty Model pp. 601-618

Estelle Kuhn, Klara Goethals, Charles El-Nouty and Luc Duchateau

Extending Ordinal Regression with a Latent Zero-Augmented Beta Distribution pp. 619-640

Kathryn M. Irvine, T. J. Rodhouse and Ilai N. Keren

Bayesian Semiparametric Model for Pathway-Based Analysis with Zero-Inflated Clinical Outcomes pp. 641-662

Lulu Cheng, Inyoung Kim and Herbert Pang

Optimal Design of Dilution Experiments Under Volume Constraints pp. 663-683

Maryam Zolghadr and Sergei Zuyev

A Reference Population-Based Conformance Proportion pp. 684-697

Hsin-I Lee, Hungyen Chen, Hirohisa Kishino and Chen-Tuo Liao

Exact-Permutation-Based Sign Tests for Clustered Binary Data Via Weighted and Unweighted Test Statistics pp. 698-712

Janie McDonald, Patrick D. Gerard, Christopher S. McMahan and William R. Schucany

Review of the Book Applied Hierarchical Modeling in Ecology Volume 1 by Marc Kéry and J. Andrew Royle pp. 713-715

A. Noble Hendrix

2016, volume 21, issue 3

Guest Editors’ Introduction to the Special Issue on “Seismomatics: Space–Time Analysis of Natural or Anthropogenic Catastrophes” pp. 403-406

J. Mateu and E. Porcu

Effective Sample Size for Line Transect Sampling Models with an Application to Marine Macroalgae pp. 407-425

Jonathan Acosta, Felipe Osorio and Ronny Vallejos

Testing Self-Similarity Through Lamperti Transformations pp. 426-447

Myoungji Lee, Marc G. Genton and Mikyoung Jun

Composite Likelihood Inference for Multivariate Gaussian Random Fields pp. 448-469

Moreno Bevilacqua, Alfredo Alegria, Daira Velandia and Emilio Porcu

Non-Stationary Dependence Structures for Spatial Extremes pp. 470-491

Raphaël Huser and Marc G. Genton

European Population Exposure to Airborne Pollutants Based on a Multivariate Spatio-Temporal Model pp. 492-511

Alessandro Fassò, Francesco Finazzi and Ferdinand Ndongo

Point Pattern Analysis of Spatial Deformation and Blurring Effects on Exceedances pp. 512-530

A. E. Madrid, J. M. Angulo and J. Mateu

Latent Process Modelling of Threshold Exceedances in Hourly Rainfall Series pp. 531-547

Paola Bortot and Carlo Gaetan

A Varying Coefficients Model For Estimating Finite Population Totals: A Hierarchical Bayesian Approach pp. 548-568

Ciro Velasco-Cruz, Luis Fernando Contreras-Cruz, Eric P. Smith and José E. Rodríguez

A Fused Lasso Approach to Nonstationary Spatial Covariance Estimation pp. 569-587

Ryan J. Parker, Brian J. Reich and Jo Eidsvik

A Note on the Royle–Nichols Model for Repeated Detection–Nondetection Data pp. 588-598

Linda M. Haines

Introduction to Ecological Sampling pp. 599-600

David Hankin

2016, volume 21, issue 2

Nonresolvable Row–Column Designs with an Even Distribution of Treatment Replications pp. 227-242

Hans-Peter Piepho, Emlyn R. Williams and Volker Michel

A Comparison of Super-Valid Restricted and Row–Column Randomization pp. 243-260

Johannes Forkman

Estimability Analysis and Optimal Design in Dynamic Multi-scale Models of Cardiac Electrophysiology pp. 261-276

Matthew S. Shotwell and Richard A. Gray

A Nonlinear Mixed-Effects Model for Multivariate Longitudinal Data with Dropout with Application to HIV Disease Dynamics pp. 277-294

Artz G. Luwanda and Henry G. Mwambi

Randomly Truncated Nonlinear Mixed-Effects Models pp. 295-313

Carolina Costa Mota Paraíba and Carlos Alberto Ribeiro Diniz

A Bayesian Superpopulation Approach to Inference for Finite Populations Based on Imperfect Diagnostic Outcomes pp. 314-327

Geoffrey Jones and Wesley O. Johnson

The Micro-behavioral Framework for Estimating Total Damage of Global Warming on Natural Resource Enterprises with Full Adaptations pp. 328-347

S. Niggol Seo

Categorising Count Data into Ordinal Responses with Application to Ecological Communities pp. 348-362

D. Fernández and S. Pledger

Using Species Proportions to Quantify Turnover in Biodiversity pp. 363-381

Yuan Yuan, Stephen T. Buckland, Phil J. Harrison, Sergey Foss and Alison Johnston

Measuring the Inspectorate: Point and Interval Estimates for Performance Indicators pp. 382-401

Geoffrey Decrouez and Andrew Robinson

2016, volume 21, issue 1

Dynamic Models for Longitudinal Butterfly Data pp. 1-21

Emily B. Dennis, Byron J. T. Morgan, Stephen N. Freeman, David B. Roy and Tom Brereton

Dynamic Models of Animal Movement with Spatial Point Process Interactions pp. 22-40

James C. Russell, Ephraim M. Hanks and Murali Haran

Accounting for Lack of Independence and Partial Overlap of Observation Zones in Line-Transect Mark-Recapture Distance Sampling pp. 41-57

D. I. MacKenzie and D. Clement

Model-Based Distance Sampling pp. 58-75

S. T. Buckland, C. S. Oedekoven and D. L. Borchers

Hazard Function Models to Estimate Mortality Rates Affecting Fish Populations with Application to the Sea Mullet (Mugil cephalus) Fishery on the Queensland Coast (Australia) pp. 76-91

Marco Kienzle

Modeling Clustered Survival Times of Loblolly Pine with Time-dependent Covariates and Shared Frailties pp. 92-110

Ram Thapa, Harold E. Burkhart, Jie Li and Yili Hong

Joint Modeling of Climate Niches for Adult and Juvenile Trees pp. 111-130

Souparno Ghosh, Kai Zhu, Alan E. Gelfand and James S. Clark

A Decision Support System for Vine Growers Based on a Bayesian Network pp. 131-151

Philippe Abbal, Jean-Marie Sablayrolles, Éric Matzner-Lober, Jean-Michel Boursiquot, Cedric Baudrit and Alain Carbonneau

Assessing the Relative Importance of Nitrogen-Retention Processes in a Large Reservoir Using Time-Series Modeling pp. 152-169

Elizabeth Hansen, Kung-Sik Chan, Christopher S. Jones and Keith Schilling

A Population-Size Model for Protein Spot Detection in Proteomic Studies pp. 170-180

Chang Xuan Mao, Sining Chen and Yitong Yang

Estimation of a Finite Population Mean and Total Using Population Ranks of Sample Units pp. 181-202

Omer Ozturk

Extended Burr XII Regression Models: Theory and Applications pp. 203-224

Beatriz R. Lanjoni, Edwin M. M. Ortega and Gauss M. Cordeiro

Review of the Book Statistical Methods in Biology by S.J. Welham, S.A. Gezan, S.J. Clark and A. Mead pp. 225-226

Juhee Lee