DYNAMIC MOVES IN LATTICE SIMULATION OF PROTEIN FOLDING

Linsen Zhang, Changjun Chen, Yi He and Yi Xiao ()
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Linsen Zhang: Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
Changjun Chen: Biophysics and Molecular Modeling Group, Department of Physics, Huazhong University of Science and Technology, Wuhan 430074, China
Yi He: Biophysics and Molecular Modeling Group, Department of Physics, Huazhong University of Science and Technology, Wuhan 430074, China
Yi Xiao: Biophysics and Molecular Modeling Group, Department of Physics, Huazhong University of Science and Technology, Wuhan 430074, China

International Journal of Modern Physics C (IJMPC), 2004, vol. 15, issue 06, 885-892

Abstract: Lattice simulation is one important method to investigate the universal principle of protein folding. The move set is a basic element in lattice simulation. We used two move sets, dynamic move set and rigid rotation move, to run simulation and compare the thermodynamic and kinetic properties. The results indicate that the dynamic move set has advantage to simulate protein folding.

Keywords: Protein folding; lattice simulation; dynamic moves; specific heat (search for similar items in EconPapers)
Date: 2004
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DOI: 10.1142/S0129183104006315

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