Improved maize reference genome with single-molecule technologies

Yinping Jiao, Paul Peluso, Jinghua Shi, Tiffany Liang, Michelle C. Stitzer, Bo Wang, Michael S. Campbell, Joshua C. Stein, Xuehong Wei, Chen-Shan Chin, Katherine Guill, Michael Regulski, Sunita Kumari, Andrew Olson, Jonathan Gent, Kevin L. Schneider, Thomas K. Wolfgruber, Michael R. May, Nathan M. Springer, Eric Antoniou, W. Richard McCombie, Gernot G. Presting, Michael McMullen, Jeffrey Ross-Ibarra, R. Kelly Dawe, Alex Hastie, David R. Rank and Doreen Ware ()
Additional contact information
Yinping Jiao: Cold Spring Harbor Laboratory, Cold Spring Harbor
Paul Peluso: Pacific Biosciences
Jinghua Shi: BioNano Genomics
Tiffany Liang: BioNano Genomics
Michelle C. Stitzer: University of California, Davis
Bo Wang: Cold Spring Harbor Laboratory, Cold Spring Harbor
Michael S. Campbell: Cold Spring Harbor Laboratory, Cold Spring Harbor
Joshua C. Stein: Cold Spring Harbor Laboratory, Cold Spring Harbor
Xuehong Wei: Cold Spring Harbor Laboratory, Cold Spring Harbor
Chen-Shan Chin: Pacific Biosciences
Katherine Guill: USDA-ARS, Plant Genetics Research Unit
Michael Regulski: Cold Spring Harbor Laboratory, Cold Spring Harbor
Sunita Kumari: Cold Spring Harbor Laboratory, Cold Spring Harbor
Andrew Olson: Cold Spring Harbor Laboratory, Cold Spring Harbor
Jonathan Gent: University of Georgia
Kevin L. Schneider: University of Hawaii
Thomas K. Wolfgruber: University of Hawaii
Michael R. May: University of California
Nathan M. Springer: University of Minnesota
Eric Antoniou: Cold Spring Harbor Laboratory, Cold Spring Harbor
W. Richard McCombie: Cold Spring Harbor Laboratory, Cold Spring Harbor
Gernot G. Presting: University of Hawaii
Michael McMullen: USDA-ARS, Plant Genetics Research Unit
Jeffrey Ross-Ibarra: Center for Population Biology, and Genome Center, University of California
R. Kelly Dawe: University of Georgia
Alex Hastie: BioNano Genomics
David R. Rank: Pacific Biosciences
Doreen Ware: Cold Spring Harbor Laboratory, Cold Spring Harbor

Nature, 2017, vol. 546, issue 7659, 524-527

Abstract: An improved reference genome for maize, using single-molecule sequencing and high-resolution optical mapping, enables characterization of structural variation and repetitive regions, and identifies lineage expansions of transposable elements that are unique to maize.

Date: 2017
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DOI: 10.1038/nature22971

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