Substrate recognition and cleavage mechanism of the monkeypox virus core protease
Yan Gao,
Xiong Xie,
Xiaoyu Zhang,
Junyuan Cao,
Weiqi Lan,
Tian You,
Dongxu Li,
Xuxue Dong,
Wenhao Dai,
Yingchun Xiang,
Shulei Hu,
Weijuan Shang,
Botao Wu,
Yumin Zhang,
Jin Xu,
Xiaoce Liu,
Haofeng Wang,
Wanlong Hu,
Mingjing Zhang,
Yinkai Duan,
Wen Cui,
Hao Zhou,
Shengjiang Mao,
Handi Jia,
Zhanqi Sun,
Menghan Jia,
Yue Yin,
Henry C. Nguyen,
Kailin Yang,
Bei Yang,
Xiuna Yang,
Xiaoyun Ji,
Gengfu Xiao,
Wei Wang (),
Leike Zhang (),
Zihe Rao (),
Hong Liu () and
Haitao Yang ()
Additional contact information
Yan Gao: ShanghaiTech University
Xiong Xie: Chinese Academy of Sciences
Xiaoyu Zhang: ShanghaiTech University
Junyuan Cao: Chinese Academy of Sciences
Weiqi Lan: ShanghaiTech University
Tian You: ShanghaiTech University
Dongxu Li: ShanghaiTech University
Xuxue Dong: ShanghaiTech University
Wenhao Dai: Chinese Academy of Sciences
Yingchun Xiang: Hubei Jiangxia Laboratory
Shulei Hu: Chinese Academy of Sciences
Weijuan Shang: Chinese Academy of Sciences
Botao Wu: Chinese Academy of Sciences
Yumin Zhang: Chinese Academy of Sciences
Jin Xu: ShanghaiTech University
Xiaoce Liu: ShanghaiTech University
Haofeng Wang: ShanghaiTech University
Wanlong Hu: ShanghaiTech University
Mingjing Zhang: ShanghaiTech University
Yinkai Duan: ShanghaiTech University
Wen Cui: Chongqing Medical University
Hao Zhou: ShanghaiTech University
Shengjiang Mao: ShanghaiTech University
Handi Jia: ShanghaiTech University
Zhanqi Sun: ShanghaiTech University
Menghan Jia: ShanghaiTech University
Yue Yin: Chinese Academy of Science
Henry C. Nguyen: ShanghaiTech University
Kailin Yang: Cleveland Clinic
Bei Yang: ShanghaiTech University
Xiuna Yang: ShanghaiTech University
Xiaoyun Ji: Nanjing University
Gengfu Xiao: Chinese Academy of Sciences
Wei Wang: Chongqing Medical University
Leike Zhang: Chinese Academy of Sciences
Zihe Rao: Tsinghua University
Hong Liu: ShanghaiTech University
Haitao Yang: ShanghaiTech University
Nature, 2025, vol. 643, issue 8070, 271-279
Abstract:
Abstract Poxviruses cause severe diseases, including smallpox and mpox, that pose major threats to human health. The poxvirus core protease (CorePro) is essential for viral maturation and is highly conserved in poxviruses, making it an attractive antiviral target1. However, the structure of CorePro remains unknown, hampering antiviral development. Here we determined the apo structure of monkeypox virus (MPXV) CorePro and the structure of CorePro in a complex with the inhibitor aloxistatin, a drug candidate for muscular dystrophy2. These structures show that CorePro forms a homodimer that features a unique ‘dancing couple’ fold. The catalytic intermediate state of CorePro was characterized by an aldehyde derivative from a natural substrate (I-G18). This derivative binds covalently to the catalytic Cys328, shifting the active site of the viral protease from a closed conformation in the apo form to a favourable open conformation upon substrate binding. On the basis of the CorePro–I-G18 complex, we designed a series of peptidomimetic inhibitors with a nitrile warhead, which could covalently anchor with the catalytic Cys328. These compounds inhibit CorePro with half-maximal inhibitory concentrations of 44.9–100.3 nM, and exhibit potent and broad anti-poxvirus activity. Our studies provide a basis for designing wide-spectrum inhibitors against poxvirus infections.
Date: 2025
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DOI: 10.1038/s41586-025-09014-x
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