Large language models as versatile predictive engines for notifiable infectious diseases

Xinsheng Wu, Jinyuan Wu, Zhongwen Wang, Xinyue Feng, Ye Yao, Jason J Ong and Huachun Zou

PLOS Digital Health, 2026, vol. 5, issue 7, 1-20

Abstract: Accurate forecasting of infectious disease cases and deaths is crucial for public health decision-making. Traditional statistical and machine learning approaches may be challenged by complex temporal patterns and heterogeneous surveillance data. We evaluated large language models (LLMs) for infectious disease forecasting. We collected monthly reported cases and deaths data from China National Notifiable Diseases Surveillance System (NNDSS) from January 2009 to February 2025, and monthly reported cases from the United States NNDSS from 2016 to 2023, covering 79 notifiable infectious diseases and 111 forecasting tasks. We evaluated seven models: four statistical models (ARIMA, TGARCH, EGARCH, ETS), two machine learning models (XGBoost, LSTM), and an LLM-based regression model built on Qwen-2.5-3B and fine-tuned using Low-Rank Adaptation (LoRA). Performance was assessed using mean absolute error (MAE), root mean squared error (RMSE), and mean absolute percentage error (MAPE). We used Friedman tests and Nemenyi post-hoc comparisons versus the LLM, reporting mean-rank differences (ΔR; > 0 indicates better LLM ranking). In pooled analyses, the Friedman test indicated significant heterogeneity across models (χ² = 26.24, P

Date: 2026
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Persistent link: https://EconPapers.repec.org/RePEc:plo:pdig00:0001527

DOI: 10.1371/journal.pdig.0001527

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