Ecological Modelling

2007 - 2025

Current editor(s): Brian D. Fath

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2011, volume 223, articles 1

Understanding the global economic crisis: A biophysical perspective pp. 4-13

Mark T. Brown and Sergio Ulgiati

Analysis of an urban energy metabolic system: Comparison of simple and complex model results pp. 14-19

Yan Zhang, Shengsheng Li, Brian D. Fath, Zhifeng Yang and Naijin Yang

A preliminary assessment of socio-ecological metabolism for three neighborhoods within a rust belt urban ecosystem pp. 20-31

Myrna H.P. Hall

Methods to empirically estimate direct and indirect rebound effect of energy-saving technological changes in households pp. 32-40

Jaume Freire-González

Generating better energy indicators: Addressing the existence of multiple scales and multiple dimensions pp. 41-53

Alevgul H. Sorman and Mario Giampietro

Modelling EROEI and net energy in the exploitation of non renewable resources pp. 54-58

Ugo Bardi, Alessandro Lavacchi and Leigh Yaxley

Effects of boreal forest management practices on the climate impact of CO2 emissions from bioenergy pp. 59-66

Francesco Cherubini, Anders H. Strømman and Edgar Hertwich

Adjusting the economy to the new energy realities of the second half of the age of oil pp. 67-71

David J. Murphy and Charles A.S. Hall

Low carbon transition options for Australia pp. 72-80

Barney Foran

Economic and environmental performance of electricity production in Finland: A multicriteria assessment framework pp. 81-90

Tiina Häyhä, Pier Paolo Franzese and Sergio Ulgiati

2011, volume 222, articles 23

Functional assessment of interconnected aquatic ecosystems in the Baiyangdian Basin—An ecological-network-analysis based approach pp. 3811-3820

Xufeng Mao and Zhifeng Yang

Individual-based modelling of adaptation in marine microbial populations using genetically defined physiological parameters pp. 3823-3837

James R. Clark, Stuart J. Daines, Timothy M. Lenton, Andrew J. Watson and Hywel T.P. Williams

Trophic models in Neotropical reservoirs: Testing hypotheses on the relationship between aging and maturity pp. 3838-3848

Éder A. Gubiani, Ronaldo Angelini, Ludgero C.G. Vieira, Luiz C. Gomes and Angelo A. Agostinho

Modelling Miscanthus yields with low resolution input data pp. 3849-3853

Mark Pogson

Process-based modeling of grassland dynamics built on ecological indicator values for land use pp. 3854-3868

Silvana Siehoff, Gottfried Lennartz, Ira C. Heilburg, Martina Roß-Nickoll, Hans Toni Ratte and Thomas G. Preuss

Modelling swimming aquatic animals in hydrodynamic models pp. 3869-3887

Jay Willis

Correct testing of mark independence for marked point patterns pp. 3888-3894

Pavel Grabarnik, Mari Myllymäki and Dietrich Stoyan

Individual-based modeling of an artificial reef fish community: Effects of habitat quantity and degree of refuge pp. 3895-3909

Matthew D. Campbell, Kenneth Rose, Kevin Boswell and James Cowan

Moving beyond simple linear allometric relationships between tree height and diameter pp. 3910-3916

Michael S. Watt and Miko U.F. Kirschbaum

Does energy dissipation increase with ecosystem succession? Testing the ecosystem exergy theory combining theoretical simulations and thermal remote sensing observations pp. 3917-3941

W.H. Maes, T. Pashuysen, A. Trabucco, F. Veroustraete and B. Muys

Modeling ecosystem responses to prescribed fires in a phosphorus-enriched Everglades wetland: II. Phosphorus dynamics and community shift in response to hydrological and seasonal scenarios pp. 3942-3956

Xiaofeng Xu, Hanqin Tian, Zhijian Pan and Cassondra R. Thomas

2011, volume 222, articles 20

CaTMAS: A multi-agent model for simulating the dynamics of carbon resources of West African villages pp. 3651-3661

Mahamadou Belem, Raphaël J. Manlay, Jean-Pierre Müller and Jean-Luc Chotte

Optimization and evaluation of the ANTHRO-BGC model for winter crops in Europe pp. 3662-3679

Shaoxiu Ma, Galina Churkina, Ralf Wieland and Arthur Gessler

Modelling evapotranspiration in a Central Asian desert ecosystem pp. 3680-3691

L. Li, G. Luo, X. Chen, Y. Li, G. Xu, H. Xu and J. Bai

Stochastic simulation model of Ankole pastoral production system: Model development and evaluation pp. 3692-3700

Henry Mulindwa, Esau Galukande, Maria Wurzinger, Julie Ojango, Ally Mwai Okeyo and Johann Sölkner

Coupling Xinanjiang model and SWAT to simulate agricultural non-point source pollution in Songtao watershed of Hainan, China pp. 3701-3717

Shengtian Yang, Guotao Dong, Donghai Zheng, Honglin Xiao, Yunfei Gao and Yang Lang

Evaluations of seasonal habitat variations of freshwater fishes, fireflies, and frogs using a habitat suitability index model that includes river water temperature pp. 3718-3726

Kei Nukazawa, Jun-ichi Shiraiwa and So Kazama

A mathematical model of algal blooms based on the characteristics of complex networks theory pp. 3727-3733

Jianyu Yao, Peng Xiao, Yunhuai Zhang, Min Zhan and Jiangwei Cheng

Dynamic accounting of emergy cycling pp. 3734-3742

David R. Tilley

Analysis of nitrogen controls on carbon and water exchanges in a conifer forest using the CLASS-CTEMN+ model pp. 3743-3760

Suo Huang, M. Altaf Arain, Vivek K. Arora, Fengming Yuan, Jason Brodeur and Matthias Peichl

Modeling urban land use change by the integration of cellular automaton and Markov model pp. 3761-3772

DongJie Guan, HaiFeng Li, Takuro Inohae, Weici Su, Tadashi Nagaie and Kazunori Hokao

A large-scale multi-species spatial depletion model for overwintering waterfowl pp. 3773-3784

Johannes M. Baveco, Harold Kuipers and Bart A. Nolet

Wetland system network analysis for environmental flow allocations in the Baiyangdian Basin, China pp. 3785-3794

Zhifeng Yang and Xufeng Mao

Development and testing of a process-based model (MOSES) for simulating soil processes, functions and ecosystem services pp. 3795-3810

M.J. Aitkenhead, F. Albanito, M.B. Jones and H.I.J. Black

2011, volume 222, articles 19

Integrative trophic network assessments of a lentic ecosystem by key ecological approaches of water chemistry, trophic guilds, and ecosystem health assessments along with an ECOPATH model pp. 3457-3472

Jeong-Ho Han, Hema K. Kumar, Jae Hoon Lee, Chang-Ik Zhang, Se-Wha Kim, Jung-Ho Lee, Sang Don Kim and Kwang-Guk An

Region of influence method improves macroinvertebrate predictive models in Maryland pp. 3473-3485

Yin-Phan Tsang, Gary K. Felton, Glenn E. Moglen and Michael Paul

An agent based model to simulate structural and land use changes in agricultural systems of the argentine pampas pp. 3486-3499

Federico E. Bert, Guillermo P. Podestá, Santiago L. Rovere, Ángel N. Menéndez, Michael North, Eric Tatara, Carlos E. Laciana, Elke Weber and Fernando Ruiz Toranzo

SWAT parameterization for the identification of critical diffuse pollution source areas under data limitations pp. 3500-3512

Y. Panagopoulos, C. Makropoulos, E. Baltas and M. Mimikou

Spatio-temporal modeling of striped-bass egg, larval movement, and fate in the San Francisco Bay–Delta pp. 3513-3523

Arash Massoudieh, Erik Loboschefsky, Ted Sommer, Timothy Ginn, Kenneth Rose and Frank Loge

Effects of density-dependent dispersal behaviours on the speed and spatial patterns of range expansion in predator–prey metapopulations pp. 3524-3530

A. Ramanantoanina, C. Hui and A. Ouhinou

Hierarchical Bayesian modelling of plant pest invasions with human-mediated dispersal pp. 3531-3540

M.A. Stanaway, R. Reeves and K.L. Mengersen

Individual-based modeling of flooding and salinity effects on a coastal swamp forest pp. 3541-3558

Susanne S. Hoeppner and Kenneth A. Rose

Modelling the effects of ‘coastal’ acidification on copper speciation pp. 3559-3567

Russell Richards, Milani Chaloupka, Marcello Sanò and Rodger Tomlinson

Predicting intertidal organism temperatures with modified land surface models pp. 3568-3576

David S. Wethey, Lindsay D. Brin, Brian Helmuth and K.A.S. Mislan

An energetic perspective on the relationship between disturbance and ecosystem productivity pp. 3577-3586

Seungjun Lee and Mark T. Brown

Modeling effects of toxin exposure in fish on long-term population size, with an application to selenium toxicity in bluegill (Lepomis macrochirus) pp. 3587-3597

Michelle Gledhill and Robert W. Van Kirk

A new scheme for initializing process-based ecosystem models by scaling soil carbon pools pp. 3598-3602

S. Hashimoto, M. Wattenbach and P. Smith

Note on LMC complexity measure pp. 3603-3604

José Roberto C. Piqueira and Sérgio Henrique V.L. de Mattos

Parallel agent-based modeling of spatial opinion diffusion accelerated using graphics processing units pp. 3605-3615

Wenwu Tang and David A. Bennett

A mechanistic model of GPS collar location data: Implications for analysis and bias mitigation pp. 3616-3625

Ben C. Augustine, Philip H. Crowley and John J. Cox

A coffee agroecosystem model: I. Growth and development of the coffee plant pp. 3626-3639

Daniel Rodríguez, José Ricardo Cure, José Miguel Cotes, Andrew Paul Gutierrez and Fernando Cantor

Qualitative modeling and monitoring of selected ecosystem functions pp. 3640-3650

J. Bila, J. Jura, J. Pokorny and I. Bukovsky

2011, volume 222, articles 18

Pattern-oriented modeling of bird foraging and pest control in coffee farms pp. 3305-3319

Steven F. Railsback and Matthew D. Johnson

Characterizing sensitivity and uncertainty in a multiscale model of a complex coral reef system pp. 3320-3334

J. Melbourne-Thomas, C.R. Johnson and E.A. Fulton

Identifying 120 years of decline in ecosystem structure and maturity of Great South Bay, New York using the Ecopath modelling approach pp. 3335-3345

M.A. Nuttall, Andre Jordaan, R.M. Cerrato and M.G. Frisk

Choice of threshold alters projections of species range shifts under climate change pp. 3346-3354

H.K. Nenzén and M.B. Araújo

Effects of climate change on moose populations: Exploring the response horizon through biometric and systems models pp. 3355-3365

Robert S. Rempel

Exploring the effects of reductions in krill biomass in the Southern Ocean on blue whales using a state-dependent foraging model pp. 3366-3379

John Wiedenmann, Katherine A. Cresswell, Jeremy Goldbogen, Jean Potvin and Marc Mangel

Integrated model projections of climate change impacts on a North American lake pp. 3380-3393

Mehmet Ümit Taner, James N. Carleton and Marjorie Wellman

Modelling of paralytic shellfish toxin biotransformations in the course of Crassostrea gigas detoxification kinetics pp. 3394-3402

Marielle Guéguen, Régis Baron, Michèle Bardouil, Philippe Truquet, Hansy Haberkorn, Patrick Lassus, Laurent Barillé and Zouher Amzil

Influence of grain size on species–habitat models pp. 3403-3412

Thomas K. Gottschalk, Birgit Aue, Stefan Hotes and Klemens Ekschmitt

The influence of soil community density on plant-soil feedbacks: An important unknown in plant invasion pp. 3413-3420

Anna G. Aguilera

Network design for soil CO2 monitoring of the northern North American region pp. 3421-3428

Chance Creelman and Dave Risk

Adaptive resource management and the value of information pp. 3429-3436

Byron K. Williams, Mitchell J. Eaton and David R. Breininger

Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation pp. 3437-3443

Jitendra Gaikwad, Peter D. Wilson and Shoba Ranganathan

Incorporating low-resolution historic species location data decreases performance of distribution models pp. 3444-3448

April E. Reside, Ian Watson, Jeremy VanDerWal and Alex S. Kutt

Factors promoting or inhibiting Turing instability in spatially extended prey–predator systems pp. 3449-3452

Stefano Fasani and Sergio Rinaldi

2011, volume 222, articles 17

Scaling-up spatially-explicit ecological models using graphics processors pp. 3011-3019

Johan van de Koppel, Rohit Gupta and Cornelis Vuik

Modelling soil carbon development in Swedish coniferous forest soils—An uncertainty analysis of parameters and model estimates using the GLUE method pp. 3020-3032

Carina Ortiz, Erik Karltun, Johan Stendahl, Annemieke I. Gärdenäs and Göran I. Ågren

Bandwidth determination for kernel density analysis of wildfire events at forest sub-district scale pp. 3033-3040

Semih Kuter, Nurunnisa Usul and Nazan Kuter

Metric–topological interaction model of collective behavior pp. 3041-3049

Takayuki Niizato and Yukio-Pegio Gunji

Effects of climatic data low-pass filtering on the ICBM temperature- and moisture-based soil biological activity factors in a cool and humid climate pp. 3050-3060

J.G. Fortin, M.A. Bolinder, F. Anctil, T. Kätterer, O. Andrén and L.E. Parent

The consequences of being colonial: Allee effects in metapopulations of seabirds pp. 3061-3070

Peter Schippers, Eric W.M. Stienen, Alex G.M. Schotman, Robbert P.H. Snep and Pieter A. Slim

Recycling flows in emergy evaluation: A mathematical paradox? pp. 3071-3081

N.Y. Amponsah, O. Le Corre and B. Lacarriere

Chemical exergy as a unified and objective indicator in the assessment and optimization of land treatment systems pp. 3082-3091

V.A. Tzanakakis and A.N. Angelakis

Incorporating dormancy in dynamic microbial community models pp. 3092-3102

Konstantin Stolpovsky, Paula Martinez-Lavanchy, Hermann J. Heipieper, Philippe Van Cappellen and Martin Thullner

Modeling seasonal course of carbon fluxes and evapotranspiration in response to low temperature and moisture in a boreal Scots pine ecosystem pp. 3103-3119

Si Hong Wu, Per-Erik Jansson and Pasi Kolari

Establishment patterns in a secondary tree line ecotone pp. 3120-3131

Alexander Peringer and Gert Rosenthal

Flow and transport characteristics at an Epinephelus guttatus (red hind grouper) spawning aggregation site in St. Thomas (US Virgin Islands) pp. 3132-3148

L.M. Cherubin, R.S. Nemeth and N. Idrisi

Waterfowls habitat modeling: Simulation of nest site selection for the migratory Little Tern (Sterna albifrons) in the Nakdong estuary pp. 3149-3156

Kwang-Seuk Jeong, Ji-Deok Jang, Dong-Kyun Kim and Gea-Jae Joo

Modelling llama population development under environmental and market constraints in the Bolivian highlands pp. 3157-3165

A.C. Treydte, A. Salvatierra, J. Sauerborn and M. Lamers

Population viability of the Siberian Tiger in a changing landscape: Going, going and gone? pp. 3166-3180

Yu Tian, Jianguo Wu, Andrew T. Smith, Tianming Wang, Xiaojun Kou and Jianping Ge

River network structure shapes interannual feedbacks between adult sea lamprey migration and larval habitation pp. 3181-3192

Thomas M. Neeson, Michael J. Wiley, Sara A. Adlerstein and Rick L. Riolo

Modelling the impact of defoliation and leaf damage on forest plantation function and production pp. 3193-3202

M. Battaglia, E.A. Pinkard, P.J. Sands, J.L. Bruce and A. Quentin

An ecological model of the habitat mosaic in estuarine nursery areas: Part I—Interaction of dispersal theory and habitat variability in describing juvenile fish distributions pp. 3203-3215

R.S. Fulford, M.S. Peterson and P.O. Grammer

The sensitivity of carbon sequestration to harvesting and climate conditions in a temperate cypress forest: Observations and modeling pp. 3216-3225

Masahito Ueyama, Atsushi Kai, Kazuhito Ichii, Ken Hamotani, Yoshiko Kosugi and Nobutaka Monji

Relationships between simulated water stress and mortality and growth rates in underplanted Toona ciliata Roem. in subtropical Argentinean plantations pp. 3226-3235

Julia Dordel, Brad Seely and Suzanne W. Simard

Evaluating weather effects on interannual variation in net ecosystem productivity of a coastal temperate forest landscape: A model intercomparison pp. 3236-3249

Zhao-Hua Wang, R.F. Grant, M.A. Arain, B.N. Chen, N. Coops, R. Hember, W.A. Kurz, D.T. Price, G. Stinson, J.A. Trofymow, J. Yeluripati and Z. Chen

Impacts of daily weather variability on simulations of the Canadian boreal forest pp. 3250-3260

Tana Stratton, David T. Price and Konrad Gajewski

Validation of a multispecies forest dynamics model using 50-year growth from Eucalyptus forests in eastern Australia pp. 3261-3270

Michael R. Ngugi and Daniel B. Botkin

Calculation of the minimum ecological water requirement of an urban river system and its deployment: A case study in Beijing central region pp. 3271-3276

Haifeng Jia, Hongtao Ma and Mingjie Wei

Weak indirect effects inherent to nitrogen biogeochemical cycling within anthropogenic ecosystems: A network environ analysis pp. 3277-3284

Yong Min, Xiaogang Jin, Jie Chang, Changhui Peng, Baojing Gu, Ying Ge and Yang Zhong

Scale-dependent relations in land cover biophysical dynamics pp. 3285-3290

Giovanni Forzieri and Filippo Catani

Testing the effectiveness of capture mark recapture population estimation techniques using a computer simulation with known population size pp. 3291-3294

Samuel G. Rees, Anne E. Goodenough, Adam G. Hart and Richard Stafford

A model for intraguild predation dynamics between immature stages pp. 3295-3299

Lucas Del Bianco Faria, Michel Iskin da S. Costa and Wesley A. Conde Godoy

2011, volume 222, articles 16

The role of water in the information exchange between the components of an ecosystem pp. 2869-2877

Larissa S. Brizhik, Emilio Del Giudice, Alberto Tedeschi and Vladimir L. Voeikov

Adapting the adaptive cycle: Hypotheses on the development of ecosystem properties and services pp. 2878-2890

Benjamin Burkhard, Brian D. Fath and Felix Müller

Dispersal vs. stochasticity: Competition for persistence in a reaction-diffusion model with strong Allee dynamics pp. 2891-2896

M.A. Budroni, F. Rossi, E. Farris, R. Filigheddu and M. Rustici

Ecodynamics: Towards an evolutionary thermodynamics of ecosystems pp. 2897-2902

E. Tiezzi

Emergy and emergy algebra explained by means of ingenuous set theory pp. 2903-2907

Simone Bastianoni, Fabiana Morandi, Tommaso Flaminio, Riccardo M. Pulselli and Elisa B.P. Tiezzi

Ontic openness: An absolute necessity for all developmental processes pp. 2908-2912

Søren Nors Nielsen and Robert E. Ulanowicz

Estimation of thermodynamic parameters of the biosphere, based on remote sensing pp. 2913-2923

Y.G. Puzachenko, R.B. Sandlersky and A. Svirejeva-Hopkins

Ecosystem services as a counterpart of emergy flows to ecosystems pp. 2924-2928

Federico M. Pulselli, Luca Coscieme and Simone Bastianoni

Calculation of the unit emergy value of water in an Italian watershed pp. 2929-2938

Federico M. Pulselli, Nicoletta Patrizi and Silvia Focardi

Towards a 3D National Ecological Footprint Geography pp. 2939-2944

V. Niccolucci, A. Galli, A. Reed, E. Neri, M. Wackernagel and S. Bastianoni

Ecosystems emerging. 5: Constraints pp. 2945-2972

Bernard C. Patten, Milan Straškraba and Sven E. Jørgensen

A model on the carbon cycling in Lake Taihu, China pp. 2973-2991

Hu Weiping, Sven Erik Jørgensen, Zhang Fabing, Chen Yonggen, Hu Zhixin and Yang Longyuan

Resistance and re-organization of an ecosystem in response to biological invasion: Some hypotheses pp. 2992-3001

Michela Marchi, Sven Erik Jørgensen, Eloy Bécares, Ilaria Corsi, Nadia Marchettini and Simone Bastianoni

Dynamic model of Lake Chozas (León, NW Spain)—Decrease in eco-exergy from clear to turbid phase due to introduction of exotic crayfish pp. 3002-3010

Michela Marchi, Sven Erik Jørgensen, Eloy Bécares, Ilaria Corsi, Nadia Marchettini and Simone Bastianoni

2011, volume 222, articles 15

Estimating the potential impact of vegetation on the water cycle requires accurate soil water parameter estimation pp. 2595-2605

Annett Wolf

A novel method for mapping reefs and subtidal rocky habitats using artificial neural networks pp. 2606-2614

Michael J. Watts, Yuxiao Li, Bayden D. Russell, Camille Mellin, Sean D. Connell and Damien A. Fordham

Methods for estimating the uncertainty in emergy table-form models pp. 2615-2622

Linjun Li, Hongfang Lu, Daniel E. Campbell and Hai Ren

An innovative computer design for modeling forest landscape change in very large spatial extents with fine resolutions pp. 2623-2630

Jian Yang, Hong S. He, Stephen R. Shifley, Frank R. Thompson and Yangjian Zhang

A SVM-based model for predicting distribution of the invasive tree Miconia calvescens in tropical rainforests pp. 2631-2641

Robin Pouteau, Jean-Yves Meyer and Benoît Stoll

Estimating dyad association probability under imperfect and heterogeneous detection pp. 2642-2650

M. Javier Klaich, Paul G. Kinas, Susana N. Pedraza, Mariano A. Coscarella and Enrique A. Crespo

Exploring alternative states in ecological systems with a qualitative analysis of community feedback pp. 2651-2662

Martin P. Marzloff, Jeffrey M. Dambacher, Craig R. Johnson, L. Richard Little and Stewart D. Frusher

Adding complex trophic interactions to a size-spectral plankton model: Emergent diversity patterns and limits on predictability pp. 2663-2675

Neil S. Banas

Stochastic modeling of the chemostat pp. 2676-2689

F. Campillo, M. Joannides and I. Larramendy-Valverde

Ecosystem states: Creating a data-derived, ecosystem-scale ecological response model that is explicit in space and time pp. 2690-2703

Rebecca E. Lester and Peter G. Fairweather

A study of plankton dynamics under osmotic stress in the Senegal River Estuary, West Africa, using a 3D mechanistic model pp. 2704-2721

M. Baklouti, C. Chevalier, M. Bouvy, D. Corbin, M. Pagano, M. Troussellier and R. Arfi

Modelling landscape effects on density–contact rate relationships of deer in eastern Alberta: Implications for chronic wasting disease pp. 2722-2732

Thomas J. Habib, Evelyn H. Merrill, M.J. Pybus and David W. Coltman

Longleaf pine (Pinus palustris) and hardwood dynamics in a fire-maintained ecosystem: A simulation approach pp. 2733-2750

E.L. Loudermilk, W.P. Cropper, R.J. Mitchell and Hyungsuk Lee

Impacts of crop residue management on soil organic matter stocks: A modelling study pp. 2751-2760

Cathy Neill

Using simulation to explore the functional relationships of terrestrial carnivore population indices pp. 2761-2769

David M. MacFarland and Timothy R. Van Deelen

Modelling the responses of wildlife to human disturbance: An evaluation of alternative management scenarios for black-crowned night-herons pp. 2770-2779

Victoria J. Bennett, Esteban Fernández-Juricic, Patrick A. Zollner, Matthew J. Beard, Lynne Westphal and Cherie L. LeBlanc Fisher

Spatially distributed modeling of the long-term carbon balance of a boreal landscape pp. 2780-2795

Ajit Govind, Jing Ming Chen, Pierre Bernier, Hank Margolis, Luc Guindon and Andre Beaudoin

Species-specific tuning increases robustness to sampling bias in models of species distributions: An implementation with Maxent pp. 2796-2811

Robert P. Anderson and Israel Gonzalez

Self-organization of tropical seasonal rain forest in southwest China pp. 2812-2816

Hua Lin, Min Cao and Yiping Zhang

Sustained dynamic transience in a Lotka–Volterra competition model system for grassland species pp. 2817-2824

I.R. Geijzendorffer, W. van der Werf, F.J.J.A. Bianchi and R.P.O. Schulte

Ecological network determination of sectoral linkages, utility relations and structural characteristics on urban ecological economic system pp. 2825-2834

G.Y. Liu, Z.F. Yang, B. Chen and Y. Zhang

An optimized policy for the reduction of CO2 emission in the Brazilian Legal Amazon pp. 2835-2840

Marco Antonio Leonel Caetano, Douglas Francisco Marcolino Gherardi and Takashi Yoneyama

Projecting landscape changes in southern Chile: Simulation of human and natural processes driving land transformation pp. 2841-2855

Sandra L. Marín, Laura Nahuelhual, Cristian Echeverría and William E. Grant

Suitability of short or long conservation contracts under ecological and socio-economic uncertainty pp. 2856-2866

Gareth D. Lennox and Paul R. Armsworth

2011, volume 222, articles 14

Progress in global ecological modelling pp. 2172-2177

Tian-Xiang Yue, Sven E. Jorgensen and Guy R. Larocque

Modeling fecundity in birds: Conceptual overview, current models, and considerations for future developments pp. 2178-2190

Matthew A. Etterson, Susan N. Ellis-Felege, David Evers, Gilles Gauthier, Joseph A. Grzybowski, Brady J. Mattsson, Laura R. Nagy, Brian J. Olsen, Craig M. Pease, Max Post van der Burg and Aaron Potvien

Analysis of behavioral changes of zebrafish (Danio rerio) in response to formaldehyde using Self-organizing map and a hidden Markov model pp. 2191-2201

Yuedan Liu, Sang-Hee Lee and Tae-Soo Chon

Using classification trees to analyze the impact of exotic species on the ecological assessment of polder lakes in Flanders, Belgium pp. 2202-2212

Gert Everaert, Pieter Boets, Koen Lock, Sašo Džeroski and Peter L.M. Goethals

Eliciting cognitive processes underlying patterns of human–wildlife interactions for agent-based modelling pp. 2213-2226

Clément Chion, P. Lamontagne, S. Turgeon, L. Parrott, J.-A. Landry, D.J. Marceau, C.C.A. Martins, R. Michaud, N. Ménard, G. Cantin and S. Dionne

Grass feedbacks on fire stabilize savannas pp. 2227-2233

Brian Beckage, Louis J. Gross and William J. Platt

Diameter growth models for mixed-species stands of Coastal British Columbia including thinning and fertilization effects pp. 2234-2248

Leah C. Rathbun, Valerie LeMay and Nick Smith

Development of TRIPLEX-Management model for simulating the response of forest growth to pre-commercial thinning pp. 2249-2261

Weifeng Wang, Changhui Peng, S.Y. Zhang, Xiaolu Zhou, Guy R. Larocque, Daniel D. Kneeshaw and Xiangdong Lei

Modelling carbon and nitrogen dynamics in forest ecosystems of Central Russia under different climate change scenarios and forest management regimes pp. 2262-2275

Vladimir N. Shanin, Alexander S. Komarov, Alexey V. Mikhailov and Sergei S. Bykhovets

Modelling above- and below-ground mass loss and N dynamics in wooden dowels (LIDET) placed across North and Central America biomes at the decadal time scale pp. 2276-2290

Amanda C. Smith, Jagtar S. Bhatti, Hua Chen, Mark E. Harmon and Paul A. Arp

Dissolved organic carbon concentrations and fluxes in forest catchments and streams: DOC-3 model pp. 2291-2313

Marie-France Jutras, Mina Nasr, Mark Castonguay, Christopher Pit, Joseph H. Pomeroy, Todd P. Smith, Cheng-fu Zhang, Charles D. Ritchie, Fan-Rui Meng, Thomas A. Clair and Paul A. Arp

Modelling and mapping topographic variations in forest soils at high resolution: A case study pp. 2314-2332

Paul N.C. Murphy, Jae Ogilvie, Fan-Rui Meng, Barry White, Jagtar S. Bhatti and Paul A. Arp

Estimating California ecosystem carbon change using process model and land cover disturbance data: 1951–2000 pp. 2333-2341

Jinxun Liu, James E. Vogelmann, Zhiliang Zhu, Carl H. Key, Benjamin M. Sleeter, David T. Price, Jing M. Chen, Mark A. Cochrane, Jeffery C. Eidenshink, Stephen M. Howard, Norman B. Bliss and Hong Jiang

Surface modelling of global terrestrial ecosystems under three climate change scenarios pp. 2342-2361

Tian-Xiang Yue, Ze-Meng Fan, Chuan-Fa Chen, Xiao-Fang Sun and Bai-Lian Li

Greenhouse gas emissions and natural resources use by the world economy: Ecological input–output modeling pp. 2362-2376

G.Q. Chen and Z.M. Chen

Emergy analysis of the urban metabolism of Beijing pp. 2377-2384

Yan Zhang, Zhifeng Yang, Gengyuan Liu and Xiangyi Yu

Embodied energy and emergy evaluation of a typical biodiesel production chain in China pp. 2385-2392

L.P. Ju and B. Chen

Reconnecting environs to their environment pp. 2393-2403

S.R. Borrett and M.A. Freeze

An inverse model for the analysis of the Venice lagoon food web pp. 2404-2413

D. Brigolin, C. Savenkoff, M. Zucchetta, F. Pranovi, P. Franzoi, P. Torricelli and R. Pastres

Evaluating the effects of future climate change and elevated CO2 on the water use efficiency in terrestrial ecosystems of China pp. 2414-2429

Qiuan Zhu, Hong Jiang, Changhui Peng, Jinxun Liu, Xiaohua Wei, Xiuqin Fang, Shirong Liu, Guomo Zhou and Shuquan Yu

Modeling water and soil quality environmental impacts associated with bioenergy crop production and biomass removal in the Midwest USA pp. 2430-2447

S.E. Powers, J.C. Ascough, R.G. Nelson and G.R. Larocque

An optimization approach for sustainable release of e-flows for lake restoration and preservation: Model development and a case study of Baiyangdian Lake, China pp. 2448-2455

Wei Yang, Zhifeng Yang and Yan Qin

An integrated modeling framework for performing environmental assessments: Application to ecosystem services in the Albemarle-Pamlico basins (NC and VA, USA) pp. 2471-2484

John M. Johnston, Daniel J. McGarvey, M. Craig Barber, Gerry Laniak, Justin Babendreier, Rajbir Parmar, Kurt Wolfe, Stephen R. Kraemer, Michael Cyterski, Chris Knightes, Brenda Rashleigh, Luis Suarez and Robert Ambrose

Analysis of spatial and temporal patterns in a large reservoir using water quality and hydrodynamic modeling pp. 2485-2494

C. Lindim, J.L. Pinho and J.M.P. Vieira

Random excitations in modelling of algal blooms in estuarine systems pp. 2495-2501

Kalyan Das and Nurul Huda Gazi

Descriptive and prediction models of phytoplankton in the northern Adriatic pp. 2502-2511

Goran Volf, Nataša Atanasova, Boris Kompare, Robert Precali and Nevenka Ožanić

Beyond the cage: Ecosystem modelling for impact evaluation in aquaculture pp. 2512-2523

Tatiana M. Tsagaraki, George Petihakis, Kostas Tsiaras, George Triantafyllou, Manolis Tsapakis, Gerasimos Korres, George Kakagiannis, Constantin Frangoulis and Ioannis Karakassis

Analysis of time series data on agroecosystem vegetation using predictive clustering trees pp. 2524-2529

Marko Debeljak, Geoffrey R. Squire, Dragi Kocev, Cathy Hawes, Mark W. Young and Sašo Džeroski

Interpreting spatial heterogeneity of crop yield with a process model and remote sensing pp. 2530-2541

Hu Shi and Mo Xingguo

Identifying key species in ecosystems with stochastic sensitivity analysis pp. 2542-2551

Carmen Maria Livi, Ferenc Jordán, Paola Lecca and Thomas A. Okey

Assessing biodegradation benefits from dispersal networks pp. 2552-2560

Thomas Banitz, Ingo Fetzer, Karin Johst, Lukas Y. Wick, Hauke Harms and Karin Frank

Agent-based simulation of effects of stress on forest tent caterpillar (Malacosoma disstria Hübner) population dynamics pp. 2561-2569

Jennifer Babin-Fenske and Madhur Anand

Development of the gap model ZELIG-CFS to predict the dynamics of North American mixed forest types with complex structures pp. 2570-2583

Guy R. Larocque, Louis Archambault and Claude Delisle

Spatio-temporal modelling of ground vegetation development in mountain spruce forests pp. 2584-2592

Lubos Matejicek, Eva Vavrova and Pavel Cudlin

2011, volume 222, articles 13

Modelling species distributions with penalised logistic regressions: A comparison with maximum entropy models pp. 2037-2041

Aitor Gastón and Juan I. García-Viñas

A simple population theory for mutualism by the use of lattice gas model pp. 2042-2048

Shigehide Iwata, Kazuyuki Kobayashi, Shinichiro Higa, Jin Yoshimura and Kei-ichi Tainaka

Do biodiversity indices behave as expected from traits of constituent species in simulated scenarios? pp. 2049-2058

Pavel Fibich and Jan Lepš

The landscape epidemiology of foot-and-mouth disease in South Africa: A spatially explicit multi-agent simulation pp. 2059-2072

Elise Dion, Louis VanSchalkwyk and Eric F. Lambin

A grassland ecosystem model of the Xilingol steppe, Inner Mongolia, China pp. 2073-2083

Masae Shiyomi, Tsuyoshi Akiyama, Shiping Wang, Yiruhan,, Ailikun,, Yoshimichi Hori, Zuozhong Chen, Taisuke Yasuda, Kensuke Kawamura and Yasuo Yamamura

A mechanistic model to predict transgenic seed contamination in bee-pollinated crops validated in an apple orchard pp. 2084-2092

Rebecca C. Tyson, J. Ben Wilson and W. David Lane

New hydroepidemiological models of indicator organisms and zoonotic pathogens in agricultural watersheds pp. 2093-2102

Graham B. McBride and Steven C. Chapra

Fish assemblages composition in a natural, then regulated, stream: A quantitative long-term study pp. 2103-2118

Tadeusz Penczak

Estimating the vulnerability of fifteen tree species under changing climate in Northwest North America pp. 2119-2129

Nicholas C. Coops and Richard H. Waring

Incorporating classified dispersal assumptions in predictive distribution models – A case study with grasshoppers and bush-crickets pp. 2130-2141

Jörn Buse and Eva Maria Griebeler

Equivalence of the realized input and output oriented indirect effects metrics in Ecological Network Analysis pp. 2142-2148

S.R. Borrett, M.A. Freeze and A.K. Salas

Integrated urban ecosystem evaluation and modeling based on embodied cosmic exergy pp. 2149-2165

M.M. Jiang and B. Chen

2011, volume 222, articles 12

Integrating soil carbon cycling with that of nitrogen and phosphorus in the watershed model SWAT: Theory and model testing pp. 1913-1921

Armen R. Kemanian, Stefan Julich, Valipuram S. Manoranjan and Jeffrey R. Arnold

Simulating the structure of natural phytoplankton assemblages: Descriptive vs. mechanistic models pp. 1922-1928

George Tsirtsis and Sofie Spatharis

Estimating marine biogeochemical rates of the carbonate pH system—A Kalman filter tested pp. 1929-1942

Karline Soetaert and Marilaure Gregoire

Complex dynamics of the population with a simple age structure pp. 1943-1950

E.Y. Frisman, G.P. Neverova and O.L. Revutskaya

Modeling cotton (Gossypium spp.) leaves and canopy using computer aided geometric design (CAGD) pp. 1951-1963

Vladimir J. Alarcon and Gretchen F. Sassenrath

An island biogeography approach for understanding changes in compositional similarity at present scenario of biotic homogenization pp. 1964-1971

Pablo M. Vergara, Jaime Pizarro and Sergio A. Castro

Simulating C cycles in forest soils: Including the active role of micro-organisms in the ANAFORE forest model pp. 1972-1985

G. Deckmyn, M. Campioli, B. Muys and H. Kraigher

Fragmentation drives tropical forest fragments to early successional states: A modelling study for Brazilian Atlantic forests pp. 1986-1997

S. Pütz, J. Groeneveld, L.F. Alves, J.P. Metzger and A. Huth

Individual-based modelling of carbon and nitrogen dynamics in soils: Parameterization and sensitivity analysis of microbial components pp. 1998-2010

Anna Gras, Marta Ginovart, Joaquim Valls and Philippe C. Baveye

Ecological niche similarities of Peponapis bees and non-domesticated Cucurbita species pp. 2011-2018

T.C. Giannini, R. Lira-Saade, R. Ayala, A.M. Saraiva and I. Alves-dos-Santos

Harvesting the sun: New estimations of the maximum population of planet Earth pp. 2019-2026

Siegfried Franck, Werner von Bloh, Christoph Müller, Alberte Bondeau and B. Sakschewski

Theory put into practice: An R implementation of the infinite-dimensional model pp. 2027-2030

Anna Kuparinen and Mats Björklund

2011, volume 222, articles 11

Parameter estimation in a simple stochastic differential equation for phytoplankton modelling pp. 1793-1799

Jan Kloppenborg Møller, Henrik Madsen and Jacob Carstensen

Species distribution modelling—Effect of design and sample size of pseudo-absence observations pp. 1800-1809

Jogeir N. Stokland, Rune Halvorsen and Bente Støa

The crucial role of the accessible area in ecological niche modeling and species distribution modeling pp. 1810-1819

Narayani Barve, Vijay Barve, Alberto Jiménez-Valverde, Andrés Lira-Noriega, Sean P. Maher, A. Townsend Peterson, Jorge Soberón and Fabricio Villalobos

Estimation of pasture infectivity according to weather conditions through a fuzzy parametrized model for the free-living stage of Ostertagia ostertagi pp. 1820-1832

M.A.E. Chaparro, G.A. Canziani, C.A. Saumell and C.A. Fiel

Simulation and analysis of outbreaks of bark beetle infestations and their management at the stand level pp. 1833-1846

Lorenz Fahse and Marco Heurich

The role of sponge competition on coral reef alternative steady states pp. 1847-1853

Manuel González-Rivero, Laith Yakob and Peter J. Mumby

A simple model to assess selection for treatment-resistant sea lice pp. 1854-1862

Alexander G. Murray

Neutral metacommunity clustering and SAR: River basin vs. 2-D landscape biodiversity patterns pp. 1863-1879

M. Convertino

Temporal limits to simulating the future spread pattern of invasive species: Buddleja davidii in Europe and New Zealand pp. 1880-1887

Joel P.W. Pitt, Darren J. Kriticos and Michael B. Dodd

Local calibration of coliforms parameters of water quality problem at Igapó I Lake, Londrina, Paraná, Brazil pp. 1888-1896

Neyva M.L. Romeiro, Rigoberto G.S. Castro, Eliandro R. Cirilo and Paulo L. Natti

2011, volume 222, articles 10

Determining factors that influence the dispersal of a pelagic species: A comparison between artificial neural networks and evolutionary algorithms pp. 1657-1665

D.R. Pontin, S. Schliebs, S.P. Worner and M.J. Watts

Estimating animal densities and home range in regions with irregular boundaries and holes: A lattice-based alternative to the kernel density estimator pp. 1666-1672

Ronald P. Barry and Julie McIntyre

Can mechanistically parameterised, anisotropic dispersal kernels provide a reliable estimate of wind-assisted dispersal? pp. 1673-1682

David Savage, Martin J. Barbetti, William J. MacLeod, Moin U. Salam and Michael Renton

Efficient thinning regimes for Eucalyptus fastigata: Multi-objective stand-level optimisation using the island model genetic algorithm pp. 1683-1695

Oliver Chikumbo and Ian Nicholas

Ecosystem modelling across a salinity gradient from the North Sea to the Baltic Sea pp. 1696-1711

Marie Maar, Eva Friis Møller, Jesper Larsen, Kristine Skovgaard Madsen, Zhenwen Wan, Jun She, Lars Jonasson and Thomas Neumann

SOMPROF: A vertically explicit soil organic matter model pp. 1712-1730

Maarten C. Braakhekke, Christian Beer, Marcel R. Hoosbeek, Markus Reichstein, Bart Kruijt, Marion Schrumpf and Pavel Kabat

Interactions between cod, herring and sprat in the changing environment of the Baltic Sea: A dynamic model analysis pp. 1731-1742

Outi Heikinheimo

Calculating ecological carrying capacity of shellfish aquaculture using mass-balance modeling: Narragansett Bay, Rhode Island pp. 1743-1755

Carrie Byron, Jason Link, Barry Costa-Pierce and David Bengtson

Regional-scale scenario analysis for the Meso-American Reef system: Modelling coral reef futures under multiple stressors pp. 1756-1770

J. Melbourne-Thomas, C.R. Johnson and E.A. Fulton

Quantifying the sustainability of water use systems: Calculating the balance between network efficiency and resilience pp. 1771-1780

Y. Li and Z.F. Yang

Resource allocation in two species systems: Is it worth acknowledging species interactions? pp. 1781-1789

William J.M. Probert, Martin Drechsler, Peter W.J. Baxter and Hugh P. Possingham

Determination of an appropriate quadrat size and shape for detecting association between plant species pp. 1790-1792

Mohammad Mousaei Sanjerehei

2011, volume 222, articles 9

Levels of emergence in individual based models: Coping with scarcity of data and pattern redundancy pp. 1557-1568

Guillaume Latombe, Lael Parrott and Daniel Fortin

Representing mediating effects and species reintroductions in Ecopath with Ecosim pp. 1569-1579

Maria J. Espinosa-Romero, Edward J. Gregr, Carl Walters, Villy Christensen and Kai M.A. Chan

A spatial–temporal optimization approach to watershed management: Acid mine drainage treatment in the Cheat River watershed, WV, USA pp. 1580-1591

Xiaobing Zhao and Jerald J. Fletcher

3D model for a secondary facultative pond pp. 1592-1603

Leena Sah, Diederik P.L. Rousseau, Christine M. Hooijmans and Piet N.L. Lens

How temperature and habitat quality affect parasitoid lifetime reproductive success—A simulation study pp. 1604-1613

Damien Denis, Jean-Sébastien Pierre, Joan van Baaren and Jacques J.M. van Alphen

The MONICA model: Testing predictability for crop growth, soil moisture and nitrogen dynamics pp. 1614-1625

C. Nendel, M. Berg, K.C. Kersebaum, W. Mirschel, X. Specka, M. Wegehenkel, K.O. Wenkel and R. Wieland

Climate, canopy conductance and leaf area development controls on evapotranspiration in a boreal coniferous forest over a 10-year period: A united model assessment pp. 1626-1638

Zhen-Ming Ge, Xiao Zhou, Seppo Kellomäki, Heli Peltola and Kai-Yun Wang

Simulating a natural fire regime on an Atlantic coast barrier island complex in Florida, USA pp. 1639-1650

Brean W. Duncan, John F. Weishampel and Seth H. Peterson

A vaccination game based on public health actions and personal decisions pp. 1651-1655

P.H.T. Schimit and L.H.A. Monteiro

2011, volume 222, articles 8

What does ecological modelling model? A proposed classification of ecological niche models based on their underlying methods pp. 1343-1346

Neftalí Sillero

What did Lotka really say? A critical reassessment of the “maximum power principle” pp. 1347-1353

Enrico Sciubba

Refining logistic regression models for wildlife habitat suitability modeling—A case study with muntjak and goral in the Central Himalayas, India pp. 1354-1366

Aditya Singh and S.P.S. Kushwaha

Revisiting Kappa to account for change in the accuracy assessment of land-use change models pp. 1367-1375

Jasper van Vliet, Arnold K. Bregt and Alex Hagen-Zanker

Steady states and sensitivities of commonly used pelagic ecosystem model components pp. 1376-1386

Ulrike Löptien

Disentangling the effects of heterogeneity, stochastic dynamics and sampling in a community of aquatic insects pp. 1387-1393

Steinar Engen, Kaare Aagaard and Terje Bongard

Estimation methods for nonlinear state-space models in ecology pp. 1394-1400

M.W. Pedersen, C.W. Berg, U.H. Thygesen, A. Nielsen and H. Madsen

Effect of model formulation on the optimization of a genetic Takagi–Sugeno fuzzy system for fish habitat suitability evaluation pp. 1401-1413

Shinji Fukuda, Bernard De Baets, Ans M. Mouton, Willem Waegeman, Jun Nakajima, Takahiko Mukai, Kazuaki Hiramatsu and Norio Onikura

Effects of local interaction and dispersal on the dynamics of size-structured populations pp. 1414-1422

Thomas Adams, Graeme Ackland, Glenn Marion and Colin Edwards

Trade-off between road avoidance and attraction by roadside salt pools in moose: An agent-based model to assess measures for reducing moose-vehicle collisions pp. 1423-1435

Paul D. Grosman, Jochen A.G. Jaeger, Pascale M. Biron, Christian Dussault and Jean-Pierre Ouellet

Modelling phytoclimatic versatility as a large scale indicator of adaptive capacity to climate change in forest ecosystems pp. 1436-1447

Javier M. García-López and Carmen Allué

Predicting local population distributions around a central shelter based on a predation risk-growth trade-off pp. 1448-1455

Zy Biesinger, Benjamin M. Bolker and William J. Lindberg

A numerical model of wave- and current-driven nutrient uptake by coral reef communities pp. 1456-1470

Zhenlin Zhang, Ryan Lowe, James Falter and Greg Ivey

Application of a Random Forest algorithm to predict spatial distribution of the potential yield of Ruditapes philippinarum in the Venice lagoon, Italy pp. 1471-1478

Simone Vincenzi, Matteo Zucchetta, Piero Franzoi, Michele Pellizzato, Fabio Pranovi, Giulio A. De Leo and Patrizia Torricelli

Influences of canopy structure and physiological traits on flux partitioning between understory and overstory in an eastern Siberian boreal larch forest pp. 1479-1490

Bao-Lin Xue, Kumagai, Tomo’omi, Iida, Shin’ichi, Taro Nakai, Kazuho Matsumoto, Hikaru Komatsu, Kyoichi Otsuki and Takeshi Ohta

Application of a three-dimensional eutrophication model for the Beijing Guanting Reservoir, China pp. 1491-1501

Guojian He, Hongwei Fang, Sen Bai, Xiaobo Liu, Minghong Chen and Jing Bai

Using a fire propagation model to assess the efficiency of prescribed burning in reducing the fire hazard pp. 1502-1514

Nathalie Cassagne, François Pimont, Jean-Luc Dupuy, Rodman R. Linn, Anders Mårell, Chloé Oliveri and Eric Rigolot

Modelling the fate of marine turtle hatchlings pp. 1515-1521

Mark Hamann, Alana Grech, Eric Wolanski and Jonathan Lambrechts

Crustacean habitat potential mapping in a tidal flat using remote sensing and GIS pp. 1522-1533

Jong-Kuk Choi, Hyun-Joo Oh, Bon Joo Koo, Joo-Hyung Ryu and Saro Lee

Anthropogenic phosphorus flow analysis of Lujiang County, Anhui Province, Central China pp. 1534-1543

Zengwei Yuan, Xin Liu, Huijun Wu, Ling Zhang and Jun Bi

The role of agent-based models in wildlife ecology and management pp. 1544-1556

Adam J. McLane, Christina Semeniuk, Gregory J. McDermid and Danielle J. Marceau

2011, volume 222, articles 7

Model parameterization for aerobic decomposition of plant resources drowned during man-made lakes formation pp. 1263-1271

Irineu Bianchini and Marcela Bianchessi da Cunha Santino

Dispersal connectivity and reserve selection for marine conservation pp. 1272-1282

Stuart Kininmonth, Maria Beger, Michael Bode, Eric Peterson, Vanessa M. Adams, Dan Dorfman, Daniel R. Brumbaugh and Hugh P. Possingham

Simple models for soil CO2, CH4, and N2O fluxes calibrated using a Bayesian approach and multi-site data pp. 1283-1292

Shoji Hashimoto, Tomoaki Morishita, Tadashi Sakata, Shigehiro Ishizuka, Shinji Kaneko and Masamichi Takahashi

Modelling the spatial population dynamics of the green oak leaf roller (Tortrix viridana) using density dependent competitive interactions: Effects of herbivore mortality and varying host-plant quality pp. 1293-1302

Stefan Kapeller, Hilke Schroeder and Silvio Schueler

Terraced fields and Mediterranean landscape structure: An analytical case study from Antikythera, Greece pp. 1303-1314

Andrew Bevan and James Conolly

Impact of excess and harmful radiation on energy budgets in scleractinian corals pp. 1315-1322

Yoan Eynaud, Roger M. Nisbet and Erik B. Muller

Assessing the effects of disease and bleaching on Florida Keys corals by fitting population models to data pp. 1323-1332

Susan Harrell Yee, Deborah L. Santavy and Mace G. Barron

Improvements in anisotropic models of single tree effects in Cartesian coordinates pp. 1333-1336

Isabelle Herrmann, Torsten Herrmann and Sven Wagner

Over-reporting bias in null model analysis: A response to Fayle and Manica (2010) pp. 1337-1339

Nicholas J. Gotelli and Werner Ulrich

2011, volume 222, articles 6

Modelling the effects of eutrophication, mitigation measures and an extreme flood event on estuarine benthic food webs pp. 1209-1221

Alexandra Baeta, Nathalie Niquil, João C. Marques and Joana Patrício

A simple plankton model for the Oregon upwelling ecosystem: Sensitivity and validation against time-series ocean data pp. 1222-1235

James J. Ruzicka, Thomas C. Wainwright and William T. Peterson

Long-term forest-floor litter dynamics in Canada's boreal forest: Comparison of two model formulations pp. 1236-1244

Chengfu Zhang, Rob C. Jamieson, Fan-Rui Meng, Robert J. Gordon, Jagtar Bhatti and Charles P.-A. Bourque

Prediction of algal blooming using EFDC model: Case study in the Daoxiang Lake pp. 1245-1252

Guozheng Wu and Zongxue Xu

A management oriented competitive model with two time scales: The case of sardine fishery along the Atlantic coast between Cantin Cape and Blanc Cape pp. 1253-1261

Najib Charouki, Nadia Raïssi, Pierre Auger, Rachid Mchich and Hmida Atmani

2011, volume 222, articles 5

Estimating an homogeneous series of a population abundance indicator despite changes in data collection procedure: A hierarchical Bayesian modelling approach pp. 1069-1079

Mélanie Brun, Christophe Abraham, Marc Jarry, Jacques Dumas, Frédéric Lange and Etienne Prévost

Including the effects of water stress on decomposition in the Carbon Budget Model of the Canadian Forest Sector CBM-CFS3 pp. 1080-1091

C.E. Smyth, W.A. Kurz and J.A. Trofymow

Resolving structural uncertainty in natural resources management using POMDP approaches pp. 1092-1102

Byron K. Williams

A model of phosphorus cycling in the epilimnion of oligotrophic and mesotrophic lakes pp. 1103-1111

Fei Chen and William D. Taylor

Simulating the potential for ecological restoration of dryland forests in Mexico under different disturbance regimes pp. 1112-1128

Elena Cantarello, Adrian C. Newton, Ross A. Hill, Natalia Tejedor-Garavito, Guadalupe Williams-Linera, Fabiola López-Barrera, Robert H. Manson and Duncan J. Golicher

Simulating spatiotemporal dynamics of urbanization with multi-agent systems—A case study of the Phoenix metropolitan region, USA pp. 1129-1138

Guangjin Tian, Yun Ouyang, Quan Quan and Jianguo Wu

Modeling the seasonal autochthonous sources of dissolved organic carbon and nitrogen in the upper Chesapeake Bay pp. 1139-1162

David P. Keller and Raleigh R. Hood

Modelling an ecosystem: The example of agro-ecosystems pp. 1163-1173

Geoffrey Caron-Lormier, David A. Bohan, Richard Dye, Cathy Hawes, Roger W. Humphry and Alan Raybould

Mapping eucalypt forest susceptible to dieback associated with bell miners (Manorina melanophys) using laser scanning, SPOT 5 and ancillary topographical data pp. 1174-1184

Andrew Haywood and Christine Stone

Modeling an exploited rocky coastal ecosystem: Bahia Tortugas, Mexico pp. 1185-1191

M.V. Morales-Zárate, S.E. Lluch-Cota, E. Serviere-Zaragoza and S. Guzmán del Próo

Evidence for the dominance of indirect effects in 50 trophic ecosystem networks pp. 1192-1204

Andria K. Salas and Stuart R. Borrett

Allee effects and extinction debt pp. 1205-1207

Matthew J. Labrum

2011, volume 222, articles 4

Modelling natural disturbances in forest ecosystems: a review pp. 903-924

Rupert Seidl, Paulo M. Fernandes, Teresa F. Fonseca, François Gillet, Anna Maria Jönsson, Katarína Merganičová, Sigrid Netherer, Alexander Arpaci, Jean-Daniel Bontemps, Harald Bugmann, Jose Ramon González-Olabarria, Petra Lasch, Céline Meredieu, Francisco Moreira, Mart-Jan Schelhaas and Frits Mohren

Is cellular automata algorithm able to predict the future dynamical shifts of tree species in Italy under climate change scenarios? A methodological approach pp. 925-934

Mario Di Traglia, Fabio Attorre, Fabio Francesconi, Roberto Valenti and Marcello Vitale

Large scale parameter study of an individual-based model of clonal plant with volunteer computing pp. 935-946

C. Mony, M. Garbey, M. Smaoui and M.-L. Benot

Movement distances enhance validity of predictive models pp. 947-954

Chia-Ying Ko, Terry L. Root and Pei-Fen Lee

Model based grouping of species across environmental gradients pp. 955-963

Piers K. Dunstan, Scott D. Foster and Ross Darnell

Stochastic gravity models for modeling lake invasions pp. 964-972

Alex Potapov, Jim R. Muirhead, Subhash R. Lele and Mark A. Lewis

Population dynamics of splitnose rockfish (Sebastes diploproa) in the Northeast Pacific Ocean pp. 973-981

Vladlena V. Gertseva and Jason M. Cope

Modelling interactions between scavenger behaviour and farming practices: Impacts on scavenger population and ecosystem service efficiency pp. 982-992

H. Dupont, J.B. Mihoub, N. Becu and F. Sarrazin

Soil organic matter dynamics in Portuguese natural and sown rainfed grasslands pp. 993-1001

R.F.M. Teixeira, Tiago Domingos, A.P.S.V. Costa, R. Oliveira, L. Farropas, F. Calouro, A.M. Barradas and J.P.B.G. Carneiro

Integrating farming techniques in an ecological matrix model: Implementation on the primrose (Primula vulgaris) pp. 1002-1015

A. Fargue-Lelièvre, D. Le Cœur and J. Baudry

Risk-based modelling of diffuse land use impacts from rural landscapes upon salmonid fry abundance pp. 1016-1029

Sim M. Reaney, Stuart N. Lane, A. Louise Heathwaite and Lucy J. Dugdale

Application of a spatial meta-population model with stochastic parameters to the management of the invasive grass Nassella trichotoma in North Canterbury, New Zealand pp. 1030-1037

Alex James, Richard Brown, Britta Basse, Graeme W. Bourdôt, Shona L. Lamoureaux, Mick Roberts and David J. Saville

Dealing with microtopography of an ombrotrophic bog for simulating ecosystem-level CO2 exchanges pp. 1038-1047

Jianghua Wu, Nigel T. Roulet, Tim R. Moore, Peter Lafleur and Elyn Humphreys

Optimization of an artificial neural network for identifying fishing set positions from VMS data: An example from the Peruvian anchovy purse seine fishery pp. 1048-1059

Rocío Joo, Sophie Bertrand, Alexis Chaigneau and Miguel Ñiquen

A revised calculation of the econometric factors α- and β for the Extended Exergy Accounting method pp. 1060-1066

Enrico Sciubba

2011, volume 222, articles 3

Herbivores enable plant survival under nutrient limited conditions in a model grazing system pp. 381-397

Susan C. Ryrie and I. Colin Prentice

Invasion and eradication of a competitively superior species in heterogeneous landscapes pp. 398-406

S. Vuilleumier, A. Buttler, N. Perrin and J.M. Yearsley

The role of conjugation in the gene–individual–population relationships in increasing eco-exergy pp. 407-418

Woon-Seok Cho, Sven Erik Jørgensen and Tae-Soo Chon

Consumer functional responses under intra- and inter-specific interference competition pp. 419-426

Pierre B. de Villemereuil and Andrés López-Sepulcre

Quantifying ecological thresholds from response surfaces pp. 427-436

Heather E. Lintz, Bruce McCune, Andrew N. Gray and Katherine A. McCulloh

Theoretical analysis of change in forest carbon use efficiency with stand development: A case study on Hinoki Cypress (Chamaecyparis obtusa (Sieb. et Zucc.) Endl.) plantation from the seedling stage pp. 437-441

Kazuharu Ogawa

Forecasting population trend from the scaling pattern of occupancy pp. 442-446

Cang Hui

Connected fragmented habitats facilitate stable coexistence dynamics pp. 447-455

Istvan Karsai and George Kampis

Environmental dispersion in a two-zone wetland pp. 456-474

Z. Wu, G.Q. Chen and L. Zeng

Predicting modes of spatial change from state-and-transition models pp. 475-484

Jonathan D. Phillips

On the importance of life history and age structure in biological invasions pp. 485-492

Johannes Järemo and Göran Bengtsson

Optical properties of selected plants from a tropical mountain ecosystem – Traits for plant functional types to parametrize a land surface model pp. 493-502

Dietrich Göttlicher, Janina Albert, Thomas Nauss and Jörg Bendix

Modelling of tree crowns with realistic morphological features: New reconstruction methodology based on Iterated Function System tool pp. 503-513

A. Collin, A. Lamorlette, D. Bernardin and O. Séro-Guillaume

Modelling feeding processes in bivalves: A mechanistic approach pp. 514-523

S. Saraiva, J. van der Meer, S.A.L.M. Kooijman and T. Sousa

An evaluation of environmental factors affecting species distributions pp. 524-531

Michael B. Ashcroft, Kristine O. French and Laurie A. Chisholm

Characterization of biological responses under different environmental conditions: A hierarchical modeling approach pp. 532-545

David Bedoya, Elias S. Manolakos and Vladimir Novotny

Solving the probabilistic reserve selection problem pp. 546-554

Alain Billionnet

Combining state and transition models with dynamic Bayesian networks pp. 555-566

Ann E. Nicholson and M. Julia Flores

Future distribution modelling: A stitch in time is not enough pp. 567-572

Philippe A. Stankowski and William H. Parker

Increasing accuracy of dispersal kernels in grid-based population models pp. 573-579

D.H. Slone

Intertype mark correlation function: A new tool for the analysis of species interactions pp. 580-587

Alicia Ledo, Sonia Condés and Fernando Montes

Null models reveal preferential sampling, spatial autocorrelation and overfitting in habitat suitability modelling pp. 588-597

Bea Merckx, Maaike Steyaert, Ann Vanreusel, Magda Vincx and Jan Vanaverbeke

Deterministic approach to the study of the interaction predator–prey in a chemostat with predator mutual interference. Implications for the paradox of enrichment pp. 598-605

María I. Cabrera F

Modelling spatial and temporal variability in a zero-inflated variable: The case of stone pine (Pinus pinea L.) cone production pp. 606-618

Rafael Calama, Sven Mutke, José Tomé, Javier Gordo, Gregorio Montero and Margarida Tomé

Estimating influence of stocking regimes on livestock grazing distributions pp. 619-625

Matthew J. Rinella, Martin Vavra, Bridgett J. Naylor and Jennifer M. Boyd

Prediction of germination rates of weed species: Relationships between germination speed parameters and species traits pp. 626-636

Antoine Gardarin, Carolyne Dürr and Nathalie Colbach

Synthesizing units as modeling tool for photosynthesizing organisms with photoinhibition and nutrient limitation pp. 637-644

Erik B. Muller

Potential solar radiation pattern in relation to the monthly distribution of giant pandas in Foping Nature Reserve, China pp. 645-652

Xuehua Liu, Xiangnan Cheng and Andrew K. Skidmore

Modeling the vegetation–atmosphere carbon dioxide and water vapor interactions along a controlled CO2 gradient pp. 653-665

Stefano Manzoni, Gabriel Katul, Philip A. Fay, H. Wayne Polley and Amilcare Porporato

Model-based analysis of the influence of ecological processes on forest point pattern formation—A case study pp. 666-678

Arne Pommerening, Valerie LeMay and Dietrich Stoyan

Linking 3D spatial models of fuels and fire: Effects of spatial heterogeneity on fire behavior pp. 679-691

Russell A. Parsons, William E. Mell and Peter McCauley

Carbon-based balanced trophic structure and flows in the offshore Lake Ontario food web before (1987–1991) and after (2001–2005) invasion-induced ecosystem change pp. 692-708

Thomas. J. Stewart and W. Gary Sprules

Wood decomposition model for boreal forests pp. 709-718

M. Tuomi, R. Laiho, A. Repo and J. Liski

Modelling N mineralization from green manure and farmyard manure from a laboratory incubation study pp. 719-726

M. Mohanty, K. Sammi Reddy, M.E. Probert, R.C. Dalal, A. Subba Rao and N.W. Menzies

A simple individual model for simulating weight gain dynamics in response to intake rate and daily behavior pp. 727-736

María Verónica Simoy

Overlooking the canopy: The importance of canopy structure in scaling isoprenoid emissions from the leaf to the landscape pp. 737-747

Trevor F. Keenan, Rüdiger Grote and Santiago Sabaté

Identifying habitat patches and potential ecological corridors for remnant Asiatic black bear (Ursus thibetanus japonicus) populations in Japan pp. 748-761

Tomoko Doko, Hiromichi Fukui, Andre Kooiman, A.G. Toxopeus, Tomohiro Ichinose, Wenbo Chen and A.K. Skidmore

Monitoring and estimating the flow conditions and fish presence probability under various flow conditions at reach scale using genetic algorithms and kriging methods pp. 762-775

Yu-Pin Lin, Cheng-Long Wang, Hsiao-Hsuan Yu, Chung-Wei Huang, Yung-Chieh Wang, Yu-Wen Chen and Wei-Yao Wu

Individual heterogeneity in recapture probability and survival estimates in cheetah pp. 776-784

Lauren J. Oliver, Byron J.T. Morgan, Sarah M. Durant and Nathalie Pettorelli

Restoration of ecosystems for biodiversity and carbon sequestration: Simulating growth dynamics of brigalow vegetation communities in Australia pp. 785-794

Michael R. Ngugi, Robert W. Johnson and William J.F. McDonald

Sensitivity of modelled gross primary productivity to topographic effects on surface radiation: A case study in the Cotter River Catchment, Australia pp. 795-803

K. Sabetraftar, B. Mackey and B. Croke

Food web structure and trophic interactions of the tropical highland lake Hayq, Ethiopia pp. 804-813

Tadesse Fetahi, Michael Schagerl, Seyoum Mengistou and Simone Libralato

Biogeographical differences between the two Capra pyrenaica subspecies, C. p. victoriae and C. p. hispanica, inhabiting the Iberian Peninsula: Implications for conservation pp. 814-823

Pelayo Acevedo and Raimundo Real

Assessing environmental factors in red spruce (Picea rubens Sarg.) growth in the Great Smoky Mountains National Park, USA: From conceptual model, envirogram, to simulation model pp. 824-834

Kyung-Ah Koo, Bernard C. Patten and Robert O. Teskey

Application of Markov-chain model for vegetation restoration assessment at landslide areas caused by a catastrophic earthquake in Central Taiwan pp. 835-845

Chin-Wei Chuang, Chao-Yuan Lin, Chang-Hai Chien and Wen-Chieh Chou

Assessing the carrying capacity of tilapia in an intertidal mangrove-based polyculture system of Pearl River Delta, China pp. 846-856

Shannan Xu, Zuozhi Chen, Chunhou Li, Xiaoping Huang and Shiyu Li

A combined ecosystem and value chain modeling approach for evaluating societal cost and benefit of fishing pp. 857-864

Villy Christensen, Jeroen Steenbeek and Pierre Failler

The urban growth, size distribution and spatio-temporal dynamic pattern of the Yangtze River Delta megalopolitan region, China pp. 865-878

Guangjin Tian, Jing Jiang, Zhifeng Yang and Yaoqi Zhang

Assessing geobiosphere work of generating global reserves of coal, crude oil, and natural gas pp. 879-887

Mark T. Brown, Gaetano Protano and Sergio Ulgiati

Implications of ecological data constraints for integrated policy and livelihoods modelling: An example from East Kalimantan, Indonesia pp. 888-896

Alex Smajgl, Alan P.N. House and James R.A. Butler

Modelling potential habitat for cougars in midwestern North America pp. 897-900

Michelle A. LaRue and Clayton K. Nielsen

2011, volume 222, articles 2

Development of a coupled reservoir operation and water diversion model: Balancing human and environmental flow requirements pp. 224-231

X.A. Yin and Z.F. Yang

Optimizing model for land use/land cover retrieval from remote sensing imagery based on variable precision rough sets pp. 232-240

Feng Xie, Yi Lin and Wenwei Ren

The effects of groundwater table and flood irrigation strategies on soil water and salt dynamics and reed water use in the Yellow River Delta, China pp. 241-252

Tao Xie, Xinhui Liu and Tao Sun

Evaluating the environmental flows of China's Wolonghu wetland and land use changes using a hydrological model, a water balance model, and remote sensing pp. 253-260

H. Chen and Y.W. Zhao

A multi-objective optimization approach to allocate environmental flows to the artificially restored wetlands of China's Yellow River Delta pp. 261-267

Wei Yang

Impacts of climate change/variability on the streamflow in the Yellow River Basin, China pp. 268-274

Qiang Liu and Baoshan Cui

Residual levels and health risk of polycyclic aromatic hydrocarbons in freshwater fishes from Lake Small Bai-Yang-Dian, Northern China pp. 275-286

Fu-Liu Xu, Wen-Jing Wu, Jun-Jun Wang, Ning Qin, Yan Wang, Qi-Shuang He, Wei He and Shu Tao

Ecological risk assessment of pesticide residues in Taihu Lake wetland, China pp. 287-292

C.S. Qu, W. Chen, J. Bi, L. Huang and F.Y. Li

Ecological degradation and hydraulic dispersion of contaminant in wetland pp. 293-300

L. Zeng and G.Q. Chen

Spatial distribution and ecological risk assessment of heavy metals in surface sediments from a typical plateau lake wetland, China pp. 301-306

Junhong Bai, Baoshan Cui, Bin Chen, Kejiang Zhang, Wei Deng, Haifeng Gao and Rong Xiao

Assessment of a model of pollution disaster in near-shore coastal waters based on catastrophe theory pp. 307-312

Wenjun Wang, Suling Liu, Shushen Zhang and Jingwen Chen

Assessment of non-point source pollution using a spatial multicriteria analysis approach pp. 313-321

H. Zhang and G.H. Huang

Cosmic exergy based ecological assessment for a wetland in Beijing pp. 322-329

Z.M. Chen, B. Chen and G.Q. Chen

Analysis of the trade-off between economic growth and the reduction of nitrogen and phosphorus emissions in the Poyang Lake Watershed, China pp. 330-336

Xiangzheng Deng, Yonghong Zhao, Feng Wu, Yingzhi Lin, Qi Lu and Jing Dai

The variations of exergies and structural exergies along eutrophication gradients in Chinese and Italian lakes pp. 337-350

Fu-Liu Xu, Jun-Jun Wang, Bin Chen, Ning Qin, Wen-Jing Wu, Wei He, Qi-Shuang He and Yin Wang

Evaluating the environmental impacts of an urban wetland park based on emergy accounting and life cycle assessment: A case study in Beijing pp. 351-359

N. Duan, X.D. Liu, J. Dai, C. Lin, Xiao-Hua Xia, R.Y. Gao, Y. Wang, S.Q. Chen, J. Yang and J. Qi

Identification of optimal strategies for improving eco-resilience to floods in ecologically vulnerable regions of a wetland pp. 360-369

Y.P. Cai, G.H. Huang, Q. Tan and B. Chen

An inexact-stochastic with recourse model for developing regional economic-ecological sustainability under uncertainty pp. 370-379

Y.P. Li, G.H. Huang, N. Zhang and S.L. Nie

2011, volume 222, articles 1

The evolution of CSR life-history strategies in a plant model with explicit physiology and architecture pp. 1-10

S. Bornhofen, S. Barot and C. Lattaud

Importance of dispersal adaptations of two competitive populations between patches pp. 11-20

Xu Zhang and Wendi Wang

Are Swiss birds tracking climate change? pp. 21-32

Ramona Maggini, Anthony Lehmann, Marc Kéry, Hans Schmid, Martin Beniston, Lukas Jenni and Niklaus Zbinden

A bio-inspired computing model as a new tool for modeling ecosystems: The avian scavengers as a case study pp. 33-47

M. Àngels Colomer, Antoni Margalida, Delfí Sanuy and Mario J. Pérez-Jiménez

Dissecting the drivers of population cycles: Interactions between parasites and mountain hare demography pp. 48-56

Sunny E. Townsend, Scott Newey, Simon J. Thirgood and Daniel T. Haydon

Modelling forest management within a global vegetation model—Part 2: Model validation from a tree to a continental scale pp. 57-75

V. Bellassen, G. le Maire, O. Guin, J.F. Dhôte, P. Ciais and N. Viovy

Modeling the impacts of calcite precipitation on the epilimnion of an ultraoligotrophic, hard-water lake pp. 76-90

Elizabeth S. Homa and Steven C. Chapra

Development of a mechanistic model (ERIMO-I) for analyzing the temporal dynamics of the benthic community of an intermittent Mediterranean stream pp. 91-104

Nele Schuwirth, Vicenç Acuña and Peter Reichert

A model for measuring leaf growth rate of vegetative shoot in the seagrass, Zostera marina pp. 105-111

Shinya Hosokawa

Numerical simulation for impacts of hydrodynamic conditions on algae growth in Chongqing Section of Jialing River, China pp. 112-119

Tian-yu Long, Lei Wu, Guo-hu Meng and Wei-hua Guo

Nitrogen versus phosphorus limitation in a subtropical coastal embayment (Moreton Bay; Australia): Implications for management pp. 120-130

Fred Wulff, Bradley D. Eyre and Ron Johnstone

Effects of modelling detail on simulated potential crop yields under a wide range of climatic conditions pp. 131-143

M. Adam, L.G.J. Van Bussel, P.A. Leffelaar, H. Van Keulen and F. Ewert

The effects of forest harvest intensity in combination with wind disturbance on carbon dynamics in Lake States Mesic Forests pp. 144-153

Robert M. Scheller, Dong Hua, Paul V. Bolstad, Richard A. Birdsey and David J. Mladenoff

The influences of climate and hydrology on population dynamics of waterbirds in the lower Murrumbidgee River floodplains in Southeast Australia: Implications for environmental water management pp. 154-163

Li Wen, Kerrylee Rogers, Neil Saintilan and Joanne Ling

Measuring and decomposing changes in agricultural productivity, nitrogen use efficiency and cumulative exergy efficiency: Application to OECD agriculture pp. 164-175

Viet-Ngu Hoang

Material, energy and environmental performance of technological and social systems under a Life Cycle Assessment perspective pp. 176-189

S. Ulgiati, M. Ascione, S. Bargigli, F. Cherubini, P.P. Franzese, M. Raugei, S. Viglia and A. Zucaro

Assessing biomass gains from marsh restoration in Delaware Bay using Ecopath with Ecosim pp. 190-200

M.G. Frisk, T.J. Miller, R.J. Latour and S.J.D. Martell

Ecosystem health assessment of the plant-dominated Baiyangdian Lake based on eco-exergy pp. 201-209

F. Xu, Z.F. Yang, B. Chen and Y.W. Zhao

Theoretical considerations on the combined use of System Dynamics and individual-based modeling in ecology pp. 210-218

Christian Ernest Vincenot, Francesco Giannino, Max Rietkerk, Kazuyuki Moriya and Stefano Mazzoleni