Ecological Modelling

2007 - 2025

Current editor(s): Brian D. Fath

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2007, volume 203, articles 3

A size-resolved pelagic ecosystem model pp. 185-203

Mark E. Baird and Iain M. Suthers

Integrating the lethal and sublethal effects of toxic compounds into the population dynamics of Daphnia magna: A combination of the DEBtox and matrix population models pp. 204-214

Elise Billoir, Alexandre R.R. Péry and Sandrine Charles

Integration of a detailed biogeochemical model into SWAT for improved nitrogen predictions—Model development, sensitivity, and GLUE analysis pp. 215-228

T. Pohlert, J.A. Huisman, L. Breuer and H.-G. Frede

Modelling blackwater: Predicting water quality during flooding of lowland river forests pp. 229-242

Julia A. Howitt, Darren S. Baldwin, Gavin N. Rees and Janice L. Williams

Global warming and human activity: A model for studying the potential instability of the carbon dioxide/temperature feedback mechanism pp. 243-256

Alessio Alexiadis

Changing scale in ecological modelling: A bottom up approach with an individual based vegetation model pp. 257-269

Nicolas Boulain, Guillaume Simioni and Jacques Gignoux

Turnover of plant trait hierarchies in simulated community assembly in response to fertility and disturbance pp. 270-278

Veiko Lehsten and Michael Kleyer

The food web structure and ecosystem properties of a filter-feeding carps dominated deep reservoir ecosystem pp. 279-289

Qi-Gen Liu, Yong Chen, Jia-Le Li and Li-Qiao Chen

Selection and evaluation of projects to conserve ecosystem services pp. 290-296

Tony Prato

Description and test of a simple process-based model of forest growth for mixed-species stands pp. 297-311

R.A. Duursma, J.D. Marshall, A.P. Robinson and R.E. Pangle

Advantages and challenges of Bayesian networks in environmental modelling pp. 312-318

Laura Uusitalo

Using a spatially explicit model to understand the impact of search rate and search distance on spatial heterogeneity within an herbivore grazing system pp. 319-326

D.L. Swain, M.R. Hutchings and G. Marion

Fate and distribution modelling of metals in life cycle impact assessment pp. 327-338

M. Strandesen, M. Birkved, P.E. Holm and M.Z. Hauschild

Nonlinear time series analysis of dissolved oxygen in the Orbetello Lagoon (Italy) pp. 339-348

Angelo Facchini, Chiara Mocenni, Norbert Marwan, Antonio Vicino and Enzo Tiezzi

The influence of landscape heterogeneity and local habitat effects on the response to competitive pressures in metapopulations pp. 349-362

Phil A. Graniero

A simple cellular automaton model for high-level vegetation dynamics pp. 363-374

R.L. Colasanti, R. Hunt and L. Watrud

Analysis of environmental factors influencing the range of anopheline mosquitoes in northern Australia using a genetic algorithm and data mining methods pp. 375-386

A.W. Sweeney, N.W. Beebe and R.D. Cooper

Resilience assessment on Phillyrea angustifolia L. maquis undergone to experimental fire through a big-leaf modelling approach pp. 387-394

Marcello Vitale, Francesca Capogna and Fausto Manes

A spatially referenced water and nitrogen management model (WNMM) for (irrigated) intensive cropping systems in the North China Plain pp. 395-423

Yong Li, Robert White, Deli Chen, Jiabao Zhang, Baoguo Li, Yuming Zhang, Yuanfang Huang and Robert Edis

Spread of an ant-dispersed annual herb: An individual-based simulation study on population development of Melampyrum pratense L pp. 424-438

Eckart Winkler and Thilo Heinken

Linking terrestrial and aquatic ecosystems: The role of woody habitat in lake food webs pp. 439-452

Brian M. Roth, Isaac C. Kaplan, Greg G. Sass, Pieter T. Johnson, Anna E. Marburg, Anthony C. Yannarell, Tanya D. Havlicek, Theodore V. Willis, Monica G. Turner and Stephen R. Carpenter

Predicting ecosystem functioning from plant traits: Results from a multi-scale ecophysiological modeling approach pp. 453-463

M.T. van Wijk

Modelling seed dispersal to predict seedling recruitment: Recolonization dynamics in a plantation forest pp. 464-474

Fabrice Sagnard, Christian Pichot, Philippe Dreyfus, Pedro Jordano and Bruno Fady

Modeling and evaluating ecosystem in 1980s and 1990s for American lobster (Homarus americanus) in the Gulf of Maine pp. 475-489

Yuying Zhang and Yong Chen

Evolution and exergy pp. 490-494

Sven Erik Jørgensen

Computation of equilibrium states and bifurcations using interval analysis: Application to food chain models pp. 495-510

C. Ryan Gwaltney, WenTao Luo and Mark A. Stadtherr

Impacts of recruitment limitation and canopy disturbance on tropical tree species richness pp. 511-517

Peter Köhler and Andreas Huth

A DirectScience: The synthesis of ScienceDirect and EmSim pp. 518-520

Sholto Maud

Influence of dispersal, stochasticity, and an Allee effect on the persistence of weed biocontrol introductions pp. 521-526

Ian D. Jonsen, Robert S. Bourchier and Jens Roland

Why not WhyWhere: The need for more complex models of simpler environmental spaces pp. 527-530

A. Townsend Peterson

2007, volume 203, articles 1

Collembolan communities in a peat bog versus surrounding forest analyzed by using self-organizing map pp. 9-17

Sithan Lek-Ang, Young-Seuk Park, Salah Ait-Mouloud and Louis Deharveng

Self-organizing mapping of benthic macroinvertebrate communities implemented to community assessment and water quality evaluation pp. 18-25

Mi-Young Song, Hyun-Ju Hwang, Inn-Sil Kwak, Chang Woo Ji, Yong-Nam Oh, Byung Jin Youn and Tae-Soo Chon

Community patterns of benthic macroinvertebrates collected on the national scale in Korea pp. 26-33

Young-Seuk Park, Mi-Young Song, Young-Cheol Park, Kyung-Hee Oh, Eungchun Cho and Tae-Soo Chon

Patterning long-term changes of fish community in large shallow Lake Peipsi pp. 34-44

Külli Kangur, Young-Seuk Park, Andu Kangur, Peeter Kangur and Sovan Lek

Fish assemblages in the large lowland Narew River system (Poland): Application of the self-organizing map algorithm pp. 45-61

A. Kruk, S. Lek, Y.-S. Park and T. Penczak

Classification of breeding bird communities along an urbanization gradient using an unsupervised artificial neural network pp. 62-71

Jangho Lee, Inn-Sil Kwak, Eungkyoung Lee and Kyung A. Kim

Development of migration models for macroinvertebrates in the Zwalm river basin (Flanders, Belgium) as tools for restoration management pp. 72-86

Andy P. Dedecker, Koen Van Melckebeke, Peter L.M. Goethals and Niels De Pauw

Neuroet: An easy-to-use artificial neural network for ecological and biological modeling pp. 87-98

Peter A. Noble and Erik H. Tribou

Predicting diatom reference communities at the French hydrosystem scale: A first step towards the definition of the good ecological status pp. 99-108

J. Tison, Y.-S. Park, M. Coste, J.G. Wasson, F. Rimet, L. Ector and F. Delmas

Community patterning and identification of predominant factors in algal bloom in Daechung Reservoir (Korea) using artificial neural networks pp. 109-118

Hee-Mock Oh, Chi-Yong Ahn, Jae-Won Lee, Tae-Soo Chon, Kyung Hee Choi and Young-Seuk Park

Macroinvertebrate assemblages in glacial stream systems: A comparison of linear multivariate methods with artificial neural networks pp. 119-131

Valeria Lencioni, Bruno Maiolini, Laura Marziali, Sovan Lek and Bruno Rossaro

Fuzzy logic analyses for the spawner-recruitment relationship of bigeye tuna (Thunnus obesus) in the Indian Ocean incorporating the environmental regime shift pp. 132-140

Tom Nishida, Ding-Geng Chen and Masahiko Mohri

Recruitment prediction with genetic algorithms with application to the Pacific Herring fishery pp. 141-146

Michel Dreyfus-León and D.G. Chen

Predictive function and rules for population dynamics of Microcystis aeruginosa in the regulated Nakdong River (South Korea), discovered by evolutionary algorithms pp. 147-156

Dong-Kyun Kim, Hongqing Cao, Kwang-Seuk Jeong, Friedrich Recknagel and Gea-Jae Joo

Range expansion of forest pest populations by using the lattice model pp. 157-166

Sang Dong Lee, Sohyun Park, Young-Seuk Park, Yeong-Jin Chung, Buom-Young Lee and Tae-Soo Chon

The role of sensitivity analysis in ecological modelling pp. 167-182

Jessica Cariboni, D. Gatelli, Roman Liska and Andrea Saltelli

2007, volume 202, articles 3

Incorporating spatial dependence in predictive vegetation models pp. 225-242

Jennifer Miller, Janet Franklin and Richard Aspinall

A functional-structural model for growth of clonal bunchgrasses pp. 243-264

Kyle W. Tomlinson, James G. Dominy, John W. Hearne and O’Connor, Timothy G.

Evaluation of a vegetation simulator for roe deer habitat predictions pp. 265-280

Sonja Vospernik, Mike Bokalo, Friedrich Reimoser and Hubert Sterba

A hierarchical simulation-through-optimization approach to forest disturbance modelling pp. 281-296

K.A. Campbell and S.M. Dewhurst

Modelling the ecosystem dynamics and nutrient cycling of the Spiekeroog back barrier system with a coupled Euler–Lagrange model on the base of ERSEM pp. 297-310

C. Kohlmeier and W. Ebenhöh

Developing above-ground woody biomass equations for open-grown, multiple-stemmed tree species: Shelterbelt-grown Russian-olive pp. 311-323

Xinhua Zhou, James R. Brandle, Michele M. Schoeneberger and Tala Awada

A raster-based technique for analysing habitat configuration: The cost–benefit approach pp. 324-332

Michael Drielsma, Simon Ferrier and Glenn Manion

Radio-tracking squirrels: Performance of home range density and linkage estimators with small range and sample size pp. 333-344

Luc A. Wauters, Damiano G. Preatoni, Ambrogio Molinari and Guido Tosi

Pathways of river nutrients towards the euphotic zone in a deep-reservoir of small size: Uncertainty analysis pp. 345-361

Francisco J. Rueda, William E. Fleenor and Inmaculada de Vicente

Can nitrogen gas be deficient for nitrogen fixation in lakes? pp. 362-372

Andreas C. Bryhn and Thorsten Blenckner

Using dynamic energy budget modeling to predict the influence of temperature and food density on the effect of Cu on earthworm mediated litter consumption pp. 373-384

P.H.F. Hobbelen and C.A.M. van Gestel

A methodology for developing simulation models of complex systems pp. 385-396

Craig A. Aumann

Ecological processes and spatial patterns before, during and after simulated deforestation pp. 397-409

George P. Malanson, Qian Wang and John A. Kupfer

Combination of process-oriented and pattern-oriented models of land-use change in a mountain area of Vietnam pp. 410-420

Jean-Christophe Castella and Peter H. Verburg

Phytoplankton modelling of Lake Erken, Sweden by linking the models PROBE and PROTECH pp. 421-426

J.A. Elliott, I. Persson, S.J. Thackeray and T. Blenckner

Organismal stoichiometry and the adaptive advantage of variable nutrient use and production efficiency in Daphnia pp. 427-440

Kenneth Mulder and William Breck Bowden

When corridors work: Insights from a microecosystem pp. 441-453

Martin Hoyle

Modeling the effect of growth rate and survivability trade-offs on species coexistence and spatial topology at a traveling invasive wave-front pp. 454-464

B. David Silverman

Modelling temperatures of crop environment pp. 465-475

Dragutin T. Mihailovic and Josef Eitzinger

A flexible modelling framework linking the spatio-temporal dynamics of plant genotypes and populations: Application to gene flow from transgenic forests pp. 476-486

Anna Kuparinen and Frank M. Schurr

Modeling dispersal of the plateau pika (Ochotona curzoniae) using a cellular automata model pp. 487-492

Hanwu Liu and Li Zhou

Egg hatching and survival time of soil-dwelling insect larvae: A partial differential equation model and experimental validation pp. 493-502

Scott N. Johnson, Xiaoxian Zhang, John W. Crawford, Peter J. Gregory and Iain M. Young

Application of automated QUAL2Kw for water quality modeling and management in the Bagmati River, Nepal pp. 503-517

Prakash Raj Kannel, S. Lee, Y.-S. Lee, S.R. Kanel and G.J. Pelletier

Systems models to evaluate eutrophication in the Broa Reservoir, São Carlos, Brazil pp. 518-526

Elmer Ccopa Rivera, Julio Ferraz de Queiroz, José Maria Ferraz and Enrique Ortega

Predicting site quality for shorebird communities: A case study on the Wash embayment, UK pp. 527-539

Andrew D. West, Michael G. Yates, Selwyn McGrorty and Richard A. Stillman

The integrated eco-environment assessment of the red soil hilly region based on GIS—A case study in Changsha City, China pp. 540-546

Zhong-Wu Li, Guang-Ming Zeng, Hua Zhang, Bin Yang and Sheng Jiao

The SAFE_AIR II dispersion model: Description and statistical evaluation of its dispersion module against wind tunnel data from area sources pp. 547-558

Monia Cavallaro, Elisa Canepa and Emilia Georgieva

2007, volume 202, articles 1

Ecosystem modeling with NEMURO within the PICES Climate Change and Carrying Capacity program pp. 7-11

Harold P. Batchelder and Makoto Kashiwai

NEMURO—a lower trophic level model for the North Pacific marine ecosystem pp. 12-25

Michio J. Kishi, Makoto Kashiwai, Daniel M. Ware, Bernard A. Megrey, David L. Eslinger, Francisco E. Werner, Maki Noguchi-Aita, Tomonori Azumaya, Masahiko Fujii, Shinji Hashimoto, Daji Huang, Hitoshi Iizumi, Yukimasa Ishida, Sukyung Kang, Gennady A. Kantakov, Hyun-cheol Kim, Kosei Komatsu, Vadim V. Navrotsky, S. Lan Smith, Kazuaki Tadokoro, Atsushi Tsuda, Orio Yamamura, Yasuhiro Yamanaka, Katsumi Yokouchi, Naoki Yoshie, Jing Zhang, Yury I. Zuenko and Vladimir I. Zvalinsky

Parameter sensitivity study of the NEMURO lower trophic level marine ecosystem model pp. 26-37

Naoki Yoshie, Yasuhiro Yamanaka, Kenneth A. Rose, David L. Eslinger, Daniel M. Ware and Michio J. Kishi

Calibration of the NEMURO nutrient–phytoplankton–zooplankton food web model to a coastal ecosystem: Evaluation of an automated calibration approach pp. 38-51

Kenneth A. Rose, Bernard A. Megrey, Francisco E. Werner and Dan M. Ware

Comparison of seasonal characteristics in biogeochemistry among the subarctic North Pacific stations described with a NEMURO-based marine ecosystem model pp. 52-67

Masahiko Fujii, Yasuhiro Yamanaka, Yukihiro Nojiri, Michio J. Kishi and Fei Chai

Seasonal and regional variations of phytoplankton groups by top–down and bottom–up controls obtained by a 3D ecosystem model pp. 68-80

Taketo Hashioka and Yasuhiro Yamanaka

Interdecadal variation of the lower trophic ecosystem in the northern Pacific between 1948 and 2002, in a 3-D implementation of the NEMURO model pp. 81-94

Maki Noguchi Aita, Yasuhiro Yamanaka and Michio J. Kishi

Ecosystem change in the western North Pacific associated with global warming using 3D-NEMURO pp. 95-104

Taketo Hashioka and Yasuhiro Yamanaka

Effects of advective processes on planktonic distributions in the Kuroshio region using a 3-D lower trophic model and a data assimilative OGCM pp. 105-119

Kosei Komatsu, Yasuo Matsukawa, Kaoru Nakata, Tadafumi Ichikawa and Katsuyuki Sasaki

A comparison of two lower trophic models for the California Current System pp. 120-131

Thomas C. Wainwright, Leah R. Feinberg, Rian C. Hooff and William T. Peterson

Application of a lower trophic level model to a coastal sea ecosystem pp. 132-143

Yury I. Zuenko

A bioenergetics-based population dynamics model of Pacific herring (Clupea harengus pallasi) coupled to a lower trophic level nutrient–phytoplankton–zooplankton model: Description, calibration, and sensitivity analysis pp. 144-164

Bernard A. Megrey, Kenneth A. Rose, Robert A. Klumb, Douglas E. Hay, Francisco E. Werner, David L. Eslinger and S. Lan Smith

The importance of spawning season on the growth of Pacific saury: A model-based study using NEMURO.FISH pp. 165-173

Daiki Mukai, Michio J. Kishi, Shin-ichi Ito and Yutaka Kurita

On the interannual variability of the growth of Pacific saury (Cololabis saira): A simple 3-box model using NEMURO.FISH pp. 174-183

Shin-Ichi Ito, Bernard A. Megrey, Michio J. Kishi, Daiki Mukai, Yutaka Kurita, Yasuhiro Ueno and Yasuhiro Yamanaka

Simulated herring growth responses in the Northeastern Pacific to historic temperature and zooplankton conditions generated by the 3-dimensional NEMURO nutrient–phytoplankton–zooplankton model pp. 184-195

Kenneth A. Rose, Francisco E. Werner, Bernard A. Megrey, Maki Noguchi Aita, Yasuhiro Yamanaka, Douglas E. Hay, Jake F. Schweigert and Matthew Birch Foster

North Pacific basin-scale differences in lower and higher trophic level marine ecosystem responses to climate impacts using a nutrient-phytoplankton–zooplankton model coupled to a fish bioenergetics model pp. 196-210

Bernard A. Megrey, Kenneth A. Rose, Shin-ichi Ito, Douglas E. Hay, Francisco E. Werner, Yasuhiro Yamanaka and Maki Noguchi Aita

Synthesis of the NEMURO model studies and future directions of marine ecosystem modeling pp. 211-223

Francisco E. Werner, Shin-Ichi Ito, Bernard A. Megrey and Michio J. Kishi