PLOS Computational Biology
2005 - 2025
From Public Library of Science Bibliographic data for series maintained by ploscompbiol (). Access Statistics for this journal.
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Volume 2, issue 12, 2006
- Cooperation is Fleeting in the World of Transposable Elements pp. 1-8

- Andreas Wagner
- Gene Expression of Caenorhabditis elegans Neurons Carries Information on Their Synaptic Connectivity pp. 1-7

- Alon Kaufman, Gideon Dror, Isaac Meilijson and Eytan Ruppin
- Transcriptional Regulation by Competing Transcription Factor Modules pp. 1-9

- Rutger Hermsen, Sander Tans and Pieter Rein ten Wolde
Volume 2, issue 11, 2006
- Ten Simple Rules for Selecting a Postdoctoral Position pp. 1-2

- Philip E Bourne and Iddo Friedberg
- Robustness and Fragility in Immunosenescence pp. 1-7

- Sean P Stromberg and Jean Carlson
- Optimal Noise Filtering in the Chemotactic Response of Escherichia coli pp. 1-12

- Burton W Andrews, Tau-Mu Yi and Pablo A Iglesias
- Meta-Analysis of Differentiating Mouse Embryonic Stem Cell Gene Expression Kinetics Reveals Early Change of a Small Gene Set pp. 1-12

- Clive H Glover, Michael Marin, Connie J Eaves, Cheryl D Helgason, James M Piret and Jennifer Bryan
- Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle pp. 1-10

- Jin Wang, Bo Huang, Xuefeng Xia and Zhirong Sun
- Computational Inference of Neural Information Flow Networks pp. 1-14

- V Anne Smith, Jing Yu, Tom V Smulders, Alexander J Hartemink and Erich D Jarvis
- Humans Can Adopt Optimal Discounting Strategy under Real-Time Constraints pp. 1-8

- N Schweighofer, K Shishida, C E Han, Y Okamoto, S C Tanaka, S Yamawaki and K Doya
Volume 2, issue 10, 2006
- Cooperation Prevails When Individuals Adjust Their Social Ties pp. 1-8

- Francisco C Santos, Jorge M Pacheco and Tom Lenaerts
Volume 2, issue 9, 2006
- Sampling Realistic Protein Conformations Using Local Structural Bias pp. 1-13

- Thomas Hamelryck, John T Kent and Anders Krogh
- Imitating Manual Curation of Text-Mined Facts in Biomedicine pp. 1-14

- Raul Rodriguez-Esteban, Ivan Iossifov and Andrey Rzhetsky
- Ten Simple Rules for Reviewers pp. 1-2

- Philip E Bourne and Alon Korngreen
Volume 2, issue 8, 2006
- Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families pp. 1-7

- Guohui Ding, Jiuhong Kang, Qi Liu, Tieliu Shi, Gang Pei and Yixue Li
- The Ion Channel Inverse Problem: Neuroinformatics Meets Biophysics pp. 1-8

- Robert C Cannon and Giampaolo D'Alessandro
Volume 2, issue 7, 2006
- Identification of Genome-Scale Metabolic Network Models Using Experimentally Measured Flux Profiles pp. 1-11

- Markus J Herrgård, Stephen S Fong and Bernhard Ø Palsson
- Complex Parameter Landscape for a Complex Neuron Model pp. 1-11

- Pablo Achard and Erik De Schutter
- Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems pp. 1-11

- Marcus Kaiser and Claus C Hilgetag
- Authors' Reply pp. 1-2

- Hung D Nguyen, Maki Yoshihama and Naoya Kenmochi
- On the Estimation of Intron Evolution pp. 1-1

- Miklós Csűrös
- Wiggle—Predicting Functionally Flexible Regions from Primary Sequence pp. 1-17

- Jenny Gu, Michael Gribskov and Philip E Bourne
Volume 2, issue 6, 2006
- A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules pp. 1-11

- Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S Wilson, John Sidney, Ole Lund, Soren Buus and Alessandro Sette
- How Does Cross-Reactive Stimulation Affect the Longevity of CD8+ T Cell Memory? pp. 1-10

- Vitaly V Ganusov, Sergei S Pilyugin, Rafi Ahmed and Rustom Antia
- Parametric Alignment of Drosophila Genomes pp. 1-9

- Colin N Dewey, Peter M Huggins, Kevin Woods, Bernd Sturmfels and Lior Pachter
- Assessing the Accuracy of Ancestral Protein Reconstruction Methods pp. 1-8

- Paul D Williams, David D Pollock, Benjamin P Blackburne and Richard A Goldstein
Volume 2, issue 5, 2006
- Reverse Engineering the Gap Gene Network of Drosophila melanogaster pp. 1-12

- Theodore J Perkins, Johannes Jaeger, John Reinitz and Leon Glass
- Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays pp. 1-10

- Rameen Beroukhim, Ming Lin, Yuhyun Park, Ke Hao, Xiaojun Zhao, Levi A Garraway, Edward A Fox, Ephraim P Hochberg, Ingo K Mellinghoff, Matthias D Hofer, Aurelien Descazeaud, Mark A Rubin, Matthew Meyerson, Wing Hung Wong, William R Sellers and Cheng Li
- Iterative Reconstruction of Transcriptional Regulatory Networks: An Algorithmic Approach pp. 1-10

- Christian L Barrett and Bernhard O Palsson
- Statistics of Knots, Geometry of Conformations, and Evolution of Proteins pp. 1-8

- Rhonald C Lua and Alexander Y Grosberg
Volume 2, issue 4, 2006
- Practical Strategies for Discovering Regulatory DNA Sequence Motifs pp. 1-10

- Kenzie D MacIsaac and Ernest Fraenkel
- The Signal in the Genomes pp. 1-2

- David Sankoff
- Conformational Changes in Protein Loops and Helices Induced by Post-Translational Phosphorylation pp. 1-13

- Eli S Groban, Arjun Narayanan and Matthew P Jacobson
- Codon Usage Domains over Bacterial Chromosomes pp. 1-13

- Marc Bailly-Bechet, Antoine Danchin, Mudassar Iqbal, Matteo Marsili and Massimo Vergassola
Volume 2, issue 3, 2006
- Circadian Clocks Are Resounding in Peripheral Tissues pp. 1-10

- Andrey A Ptitsyn, Sanjin Zvonic, Steven A Conrad, L Keith Scott, Randall L Mynatt and Jeffrey M Gimble
Volume 2, issue 2, 2006
- Seriation in Paleontological Data Using Markov Chain Monte Carlo Methods pp. 1-9

- Kai Puolamäki, Mikael Fortelius and Heikki Mannila
- Ten Simple Rules for Getting Grants pp. 1-2

- Philip E Bourne and Leo M Chalupa
Volume 1, issue 7, 2005
- New Maximum Likelihood Estimators for Eukaryotic Intron Evolution pp. 1-8

- Hung D Nguyen, Maki Yoshihama and Naoya Kenmochi
- PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny pp. 1-23

- Rahul Siddharthan, Eric D Siggia and Erik van Nimwegen
Volume 1, issue 6, 2005
- A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes pp. 1-10

- Daniel H Haft, Jeremy Selengut, Emmanuel F Mongodin and Karen E Nelson
- Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection pp. 1-13

- Rajeev K Azad and Jeffrey G Lawrence
- Bioinformatics Education—Perspectives and Challenges pp. 1-2

- Shoba Ranganathan
- Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments pp. 1-7

- Alon Kaufman, Alon Keinan, Isaac Meilijson, Martin Kupiec and Eytan Ruppin
Volume 1, issue 5, 2005
- Protein Molecular Function Prediction by Bayesian Phylogenomics pp. 1-

- Barbara E Engelhardt, Michael I Jordan, Kathryn E Muratore and Steven E Brenner
- Genomic Variability within an Organism Exposes Its Cell Lineage Tree pp. 1-13

- Dan Frumkin, Adam Wasserstrom, Shai Kaplan, Uriel Feige and Ehud Shapiro
- Ten Simple Rules for Getting Published pp. 1-2

- Philip E Bourne
- The ISCB: Growing and Evolving in Step with Science pp. 1-6

- Michael Gribskov
Volume 1, issue 4, 2005
- Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family pp. 1-

- Carsten Rautengarten, Dirk Steinhauser, Dirk Büssis, Annick Stintzi, Andreas Schaller, Joachim Kopka and Thomas Altmann
Volume 1, issue 2, 2005
- Recognition of Unknown Conserved Alternatively Spliced Exons pp. 1-

- Uwe Ohler, Noam Shomron and Christopher B Burge
Volume 1, issue 1, 2005
- Combinatorial Pattern Discovery Approach for the Folding Trajectory Analysis of a β -Hairpin pp. 1-

- Laxmi Parida and Ruhong Zhou
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