PLOS Computational Biology
2005 - 2025
From Public Library of Science Bibliographic data for series maintained by ploscompbiol (). Access Statistics for this journal.
Is something missing from the series or not right? See the RePEc data check for the archive and series.
Volume 4, issue 12, 2008
- Formation and Growth of Oligomers: A Monte Carlo Study of an Amyloid Tau Fragment pp. 1-12

- Da-Wei Li, Sandipan Mohanty, Anders Irbäck and Shuanghong Huo
- Search Algorithms as a Framework for the Optimization of Drug Combinations pp. 1-14

- Diego Calzolari, Stefania Bruschi, Laurence Coquin, Jennifer Schofield, Jacob D Feala, John C Reed, Andrew D McCulloch and Giovanni Paternostro
- Game Theory of Mind pp. 1-14

- Wako Yoshida, Ray J Dolan and Karl J Friston
- I Am Not a Scientist, I Am a Number pp. 1-3

- Philip E Bourne and J Lynn Fink
- Disordered Flanks Prevent Peptide Aggregation pp. 1-7

- Sanne Abeln and Daan Frenkel
- Mechanics and Dynamics of X-Chromosome Pairing at X Inactivation pp. 1-7

- Antonio Scialdone and Mario Nicodemi
- The Morphological Identity of Insect Dendrites pp. 1-7

- Hermann Cuntz, Friedrich Forstner, Juergen Haag and Alexander Borst
Volume 4, issue 11, 2008
- Hierarchical Models in the Brain pp. 1-24

- Karl Friston
- A Generic Mechanism of Emergence of Amyloid Protofilaments from Disordered Oligomeric Aggregates pp. 1-7

- Stefan Auer, Filip Meersman, Christopher M Dobson and Michele Vendruscolo
- Behavioral Sequence Analysis Reveals a Novel Role for ß2* Nicotinic Receptors in Exploration pp. 1-12

- Nicolas Maubourguet, Annick Lesne, Jean-Pierre Changeux, Uwe Maskos and Philippe Faure
- Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks pp. 1-14

- Sheila M Reynolds, Lukas Käll, Michael E Riffle, Jeff A Bilmes and William Stafford Noble
- Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag pp. 1-23

- Jonathan M Carlson, Zabrina L Brumme, Christine M Rousseau, Chanson J Brumme, Philippa Matthews, Carl Kadie, James I Mullins, Bruce D Walker, P Richard Harrigan, Philip J R Goulder and David Heckerman
- A Predictive Model of the Oxygen and Heme Regulatory Network in Yeast pp. 1-21

- Anshul Kundaje, Xiantong Xin, Changgui Lan, Steve Lianoglou, Mei Zhou, Li Zhang and Christina Leslie
Volume 4, issue 10, 2008
- Support Vector Machines and Kernels for Computational Biology pp. 1-10

- Asa Ben-Hur, Cheng Soon Ong, Sören Sonnenburg, Bernhard Schölkopf and Gunnar Rätsch
- Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs pp. 1-10

- Ran Elkon and Reuven Agami
- Nonidentifiability of the Source of Intrinsic Noise in Gene Expression from Single-Burst Data pp. 1-10

- Piers J Ingram, Michael P H Stumpf and Jaroslav Stark
- Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes pp. 1-12

- Yang Shen, Ioannis Ch Paschalidis, Pirooz Vakili and Sandor Vajda
- Noise during Rest Enables the Exploration of the Brain's Dynamic Repertoire pp. 1-12

- Anandamohan Ghosh, Y Rho, A R McIntosh, R Kötter and V K Jirsa
- The Effects of NR2 Subunit-Dependent NMDA Receptor Kinetics on Synaptic Transmission and CaMKII Activation pp. 1-16

- David M Santucci and Sridhar Raghavachari
- Aggregation Propensity of the Human Proteome pp. 1-9

- Elodie Monsellier, Matteo Ramazzotti, Niccolò Taddei and Fabrizio Chiti
- Cell Groups Reveal Structure of Stimulus Space pp. 1-13

- Carina Curto and Vladimir Itskov
Volume 4, issue 9, 2008
- A Dual Receptor Crosstalk Model of G-Protein-Coupled Signal Transduction pp. 1-11

- Patrick Flaherty, Mala L Radhakrishnan, Tuan Dinh, Robert A Rebres, Tamara I Roach, Michael I Jordan and Adam P Arkin
- Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae pp. 1-10

- Ji-Ping Wang, Yvonne Fondufe-Mittendorf, Liqun Xi, Guei-Feng Tsai, Eran Segal and Jonathan Widom
- Protein Meta-Functional Signatures from Combining Sequence, Structure, Evolution, and Amino Acid Property Information pp. 1-13

- Kai Wang, Jeremy A Horst, Gong Cheng, David C Nickle and Ram Samudrala
- Adaptation and Selective Information Transmission in the Cricket Auditory Neuron AN2 pp. 1-18

- Klaus Wimmer, K Jannis Hildebrandt, R Matthias Hennig and Klaus Obermayer
- Probabilistic Phylogenetic Inference with Insertions and Deletions pp. 1-21

- Elena Rivas and Sean R Eddy
Volume 4, issue 8, 2008
- Combining Structural Connectivity and Response Latencies to Model the Structure of the Visual System pp. 1-14

- Michael Capalbo, Eric Postma and Rainer Goebel
- Modeling the Violation of Reward Maximization and Invariance in Reinforcement Schedules pp. 1-17

- Giancarlo La Camera and Barry J Richmond
- A Feature-Based Approach to Modeling Protein–DNA Interactions pp. 1-17

- Eilon Sharon, Shai Lubliner and Eran Segal
- Retroviral Integration Process in the Human Genome: Is It Really Non-Random? A New Statistical Approach pp. 1-6

- Alessandro Ambrosi, Claudia Cattoglio and Clelia Di Serio
- Cooperative Transition between Open and Closed Conformations in Potassium Channels pp. 1-11

- Turkan Haliloglu and Nir Ben-Tal
- The Effect of a ΔK280 Mutation on the Unfolded State of a Microtubule-Binding Repeat in Tau pp. 1-12

- Austin Huang and Collin M Stultz
- Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target Pathways pp. 1-12

- Sangjo Han and Dongsup Kim
- Modeling ChIP Sequencing In Silico with Applications pp. 1-10

- Zhengdong D Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang and Mark Gerstein
- Network Inference Algorithms Elucidate Nrf2 Regulation of Mouse Lung Oxidative Stress pp. 1-15

- Ronald C Taylor, George Acquaah-Mensah, Mudita Singhal, Deepti Malhotra and Shyam Biswal
- A Novel Three-Phase Model of Brain Tissue Microstructure pp. 1-9

- Jana L Gevertz and Salvatore Torquato
- Intramolecular Cohesion of Coils Mediated by Phenylalanine–Glycine Motifs in the Natively Unfolded Domain of a Nucleoporin pp. 1-13

- V V Krishnan, Edmond Y Lau, Justin Yamada, Daniel P Denning, Samir S Patel, Michael E Colvin and Michael F Rexach
Volume 4, issue 7, 2008
- Intrinsic Gain Modulation and Adaptive Neural Coding pp. 1-11

- Sungho Hong, Brian Nils Lundstrom and Adrienne L Fairhall
- Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology pp. 1-12

- Karthik Devarajan
- Circadian Phase Resetting via Single and Multiple Control Targets pp. 1-10

- Neda Bagheri, Jörg Stelling and Francis J Doyle
- Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan pp. 1-10

- Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus and Ole Lund
- Increased Brain Signal Variability Accompanies Lower Behavioral Variability in Development pp. 1-9

- Anthony Randal McIntosh, Natasa Kovacevic and Roxane J Itier
- The Generation of Promoter-Mediated Transcriptional Noise in Bacteria pp. 1-9

- Namiko Mitarai, Ian B Dodd, Michael T Crooks and Kim Sneppen
- Optimal Compensation for Temporal Uncertainty in Movement Planning pp. 1-9

- Todd E Hudson, Laurence T Maloney and Michael S Landy
- Local Function Conservation in Sequence and Structure Space pp. 1-13

- Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer and Ingolf Sommer
- Similarity Queries for Temporal Toxicogenomic Expression Profiles pp. 1-13

- Adam A Smith, Aaron Vollrath, Christopher A Bradfield and Mark Craven
Volume 4, issue 6, 2008
- Ten Simple Rules for Organizing a Scientific Meeting pp. 1-3

- Manuel Corpas, Nils Gehlenborg, Sarath Chandra Janga and Philip E Bourne
- CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing pp. 1-20

- Pradipta Ray, Suyash Shringarpure, Mladen Kolar and Eric P Xing
- How To Advance Open International Scientific Exchange pp. 1-2

- Barbara Bryant
- ISMB 2008 Toronto pp. 1-5

- Michal Linial, Jill P Mesirov, B J Morrison McKay and Burkhard Rost
- A Comparative Computer Simulation of Dendritic Morphology pp. 1-15

- Duncan E Donohue and Giorgio A Ascoli
- Model-Based Hypothesis Testing of Key Mechanisms in Initial Phase of Insulin Signaling pp. 1-10

- Gunnar Cedersund, Jacob Roll, Erik Ulfhielm, Anna Danielsson, Henrik Tidefelt and Peter Strålfors
- Machine-Learning Approaches for Classifying Haplogroup from Y Chromosome STR Data pp. 1-12

- Joseph Schlecht, Matthew E Kaplan, Kobus Barnard, Tatiana Karafet, Michael F Hammer and Nirav C Merchant
- Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins pp. 1-12

- Jason W Locasale and Arup K Chakraborty
Volume 4, issue 5, 2008
- Silent Synapses, LTP, and the Indirect Parallel-Fibre Pathway: Computational Consequences of Optimal Cerebellar Noise-Processing pp. 1-9

- John Porrill and Paul Dean
- Viral Population Estimation Using Pyrosequencing pp. 1-13

- Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, Soo-Yon Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W Shafer and Niko Beerenwinkel
- Ten Simple Rules for Aspiring Scientists in a Low-Income Country pp. 1-2

- Edgardo Moreno and José-María Gutiérrez
- An Allosteric Mechanism for Switching between Parallel Tracks in Mammalian Sulfur Metabolism pp. 1-10

- Tatyana K Korendyaseva, Denis N Kuvatov, Vladimir A Volkov, Michael V Martinov, Victor M Vitvitsky, Ruma Banerjee and Fazoil I Ataullakhanov
- Context-Specific Metabolic Networks Are Consistent with Experiments pp. 1-10

- Scott A Becker and Bernhard O Palsson
- Uncovering Interactions in the Frequency Domain pp. 1-10

- Shuixia Guo, Jianhua Wu, Mingzhou Ding and Jianfeng Feng
- Discovering Sequence Motifs with Arbitrary Insertions and Deletions pp. 1-12

- Martin C Frith, Neil F W Saunders, Bostjan Kobe and Timothy L Bailey
- Measuring Global Credibility with Application to Local Sequence Alignment pp. 1-12

- Bobbie-Jo M Webb-Robertson, Lee Ann McCue and Charles E Lawrence
- A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation pp. 1-14

- Sean R Eddy
Volume 4, issue 4, 2008
- The Statistical Neuroanatomy of Frontal Networks in the Macaque pp. 1-11

- Bruno B Averbeck and Moonsang Seo
- Efficient Olfactory Coding in the Pheromone Receptor Neuron of a Moth pp. 1-11

- Lubomir Kostal, Petr Lansky and Jean-Pierre Rospars
- Dimensionality and Dynamics in the Behavior of C. elegans pp. 1-10

- Greg J Stephens, Bethany Johnson-Kerner, William Bialek and William S Ryu
- A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach pp. 1-10

- Peng Wang, John Sidney, Courtney Dow, Bianca Mothé, Alessandro Sette and Bjoern Peters
- Predicting Co-Complexed Protein Pairs from Heterogeneous Data pp. 1-10

- Jian Qiu and William Stafford Noble
- Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes pp. 1-9

- Jon Bohlin, Eystein Skjerve and David W Ussery
- Translational Systems Biology of Inflammation pp. 1-6

- Yoram Vodovotz, Marie Csete, John Bartels, Steven Chang and Gary An
- Distinct Timing Mechanisms Produce Discrete and Continuous Movements pp. 1-8

- Raoul Huys, Breanna E Studenka, Nicole L Rheaume, Howard N Zelaznik and Viktor K Jirsa
- Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data pp. 1-8

- Sourav Bandyopadhyay, Ryan Kelley, Nevan J Krogan and Trey Ideker
Volume 4, issue 3, 2008
- Src Kinase Conformational Activation: Thermodynamics, Pathways, and Mechanisms pp. 1-14

- Sichun Yang and Benoît Roux
- Robustness of Learning That Is Based on Covariance-Driven Synaptic Plasticity pp. 1-10

- Yonatan Loewenstein
- Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions pp. 1-10

- Thomas Manke, Helge G Roider and Martin Vingron
- Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution pp. 1-12

- Ilya Nemenman, Geoffrey D Lewen, William Bialek and Rob R de Ruyter van Steveninck
Volume 4, issue 2, 2008
- Computational Methods for Protein Identification from Mass Spectrometry Data pp. 1-12

- Leo McHugh and Jonathan W Arthur
- Stimulus Design for Model Selection and Validation in Cell Signaling pp. 1-10

- Joshua F Apgar, Jared E Toettcher, Drew Endy, Forest M White and Bruce Tidor
- Stochastic Differential Equation Model for Cerebellar Granule Cell Excitability pp. 1-11

- Antti Saarinen, Marja-Leena Linne and Olli Yli-Harja
- Multi-Scale Simulations Provide Supporting Evidence for the Hypothesis of Intramolecular Protein Translocation in GroEL/GroES Complexes pp. 1-7

- Ivan Coluzza, Alfonso De Simone, Franca Fraternali and Daan Frenkel
- Filling-In and Suppression of Visual Perception from Context: A Bayesian Account of Perceptual Biases by Contextual Influences pp. 1-13

- Li Zhaoping and Li Jingling
- Statistical Resolution of Ambiguous HLA Typing Data pp. 1-15

- Jennifer Listgarten, Zabrina Brumme, Carl Kadie, Gao Xiaojiang, Bruce Walker, Mary Carrington, Philip Goulder and David Heckerman
- On the Process of Becoming a Great Scientist pp. 1-3

- Morgan C Giddings
- Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures pp. 1-6

- Dennis Kostka and Rainer Spang
- Predicting the Receptive Range of Olfactory Receptors pp. 1-8

- Rafi Haddad, Liran Carmel, Noam Sobel and David Harel
- Accurate Structural Correlations from Maximum Likelihood Superpositions pp. 1-8

- Douglas L Theobald and Deborah S Wuttke
- Diminished Self-Chaperoning Activity of the ΔF508 Mutant of CFTR Results in Protein Misfolding pp. 1-8

- Adrian W R Serohijos, Tamás Hegedűs, John R Riordan and Nikolay V Dokholyan
Volume 4, issue 1, 2008
- Why is Real-World Visual Object Recognition Hard? pp. 1-6

- Nicolas Pinto, David D Cox and James J DiCarlo
- Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al pp. 1-2

- David C Nickle, Nebojsa Jojic, David Heckerman, Vladimir Jojic, Darko Kirovski, Morgane Rolland, Sergei Kosakovsky Pond and James I Mullins
- Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion pp. 1-11

- Guo-Cheng Yuan and Jun S Liu
| |