PLOS Computational Biology

2005 - 2022

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Volume 1, issue 7, 2005

PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny pp. 1-23

Rahul Siddharthan, Eric D Siggia and Erik van Nimwegen

Time to Organize the Bioinformatics Resourceome pp. 1-3

Nicola Cannata, Emanuela Merelli and Russ B Altman

New Maximum Likelihood Estimators for Eukaryotic Intron Evolution pp. 1-8

Hung D Nguyen, Maki Yoshihama and Naoya Kenmochi

Volume 1, issue 6, 2005

Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments pp. 1-7

Alon Kaufman, Alon Keinan, Isaac Meilijson, Martin Kupiec and Eytan Ruppin

Bioinformatics Education—Perspectives and Challenges pp. 1-2

Shoba Ranganathan

A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes pp. 1-10

Daniel H Haft, Jeremy Selengut, Emmanuel F Mongodin and Karen E Nelson

Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis pp. 1-11

Thomas LaFramboise, Barbara A Weir, Xiaojun Zhao, Rameen Beroukhim, Cheng Li, David Harrington, William R Sellers and Matthew Meyerson

Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection pp. 1-13

Rajeev K Azad and Jeffrey G Lawrence

Volume 1, issue 5, 2005

Genomic Variability within an Organism Exposes Its Cell Lineage Tree pp. 1-13

Dan Frumkin, Adam Wasserstrom, Shai Kaplan, Uriel Feige and Ehud Shapiro

Protein Molecular Function Prediction by Bayesian Phylogenomics pp. 1-

Barbara E Engelhardt, Michael I Jordan, Kathryn E Muratore and Steven E Brenner

The ISCB: Growing and Evolving in Step with Science pp. 1-6

Michael Gribskov

Ten Simple Rules for Getting Published pp. 1-2

Philip E Bourne

Volume 1, issue 4, 2005

A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation pp. 1-

Daniel A Beard

Analysis of a Splice Array Experiment Elucidates Roles of Chromatin Elongation Factor Spt4–5 in Splicing pp. 1-

Yuanyuan Xiao, Yee H Yang, Todd A Burckin, Lily Shiue, Grant A Hartzog and Mark R Segal

Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family pp. 1-

Carsten Rautengarten, Dirk Steinhauser, Dirk Büssis, Annick Stintzi, Andreas Schaller, Joachim Kopka and Thomas Altmann

Modeling the Amplification Dynamics of Human Alu Retrotransposons pp. 1-

Dale J Hedges, Richard Cordaux, Jinchuan Xing, David J Witherspoon, Alan R Rogers, Lynn B Jorde and Mark A Batzer

Volume 1, issue 3, 2005

Evidence of a Double-Lid Movement in Pseudomonas aeruginosa Lipase: Insights from Molecular Dynamics Simulations pp. 1-

Subbulakshmi Latha Cherukuvada, Aswin Sai Narain Seshasayee, Krishnan Raghunathan, Sharmila Anishetty and Gautam Pennathur

Volume 1, issue 2, 2005

Recognition of Unknown Conserved Alternatively Spliced Exons pp. 1-

Uwe Ohler, Noam Shomron and Christopher B Burge

Molecular Switches at the Synapse Emerge from Receptor and Kinase Traffic pp. 1-

Arnold Hayer and Upinder S Bhalla

Volume 1, issue 1, 2005

Combinatorial Pattern Discovery Approach for the Folding Trajectory Analysis of a β-Hairpin pp. 1-

Laxmi Parida and Ruhong Zhou

PLoS Computational Biology: A New Community Journal pp. 1-1

Philip E Bourne, Steven E Brenner and Michael B Eisen

An Open Forum for Computational Biology pp. 1-1

Michael Gribskov