Working Papers

From Santa Fe Institute
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02-012: Rediscovering Computational Autopoiesis

Barry McMullin and Francisco J. Varela

02-012: The Dynamics of Iterated Transportation Simulations

Kai Nagel, Marcus Rickert, Patrice M. Simon and Martin Pieck

02-012: A Parallel Non-Neural Trigger Tracker for the SSC

R.M. Farber, W. Kinnison and A.S. Lapedes

02-012: Entropic Coulomb Forces in Ising and Potts Antiferromagnets and Ice Models

Cristopher Moore, Mats G. Nordahl, Nelson Minar and Cosma Shalizi

02-012: Regularities Unseen, Randomness Observed: Levels of Entropy Convergence

James P. Crutchfield and David P. Feldman

02-011: Phase Transitions in Random Networks with Multiple States

Ricard V. Solé, Bartolo Luque and Stuart Kauffman

02-011: Recombination Spaces, Metrics, and Pretopologies

BŠrbel M. R. Stadler, Peter F. Stadler, Max Shpak and GŸnter P. Wagner

02-011: Ontological Reflections on Peace and War

Hayward R. Alker

02-011: Application of Neural Networks and Other Machine Learning Algorithms to DNA Sequence Analysis

A. Lapedes, C. Barnes, C. Burks, R. Farber and K. Sirotkin

02-010: Secondary Structure of the 3'-Non-Coding Region of Flavivirus Genomes

Susanne Rauscher, Christoph Flamm, Christian W. Mandl, Franz X. Heinz and Peter F. Stadler

02-010: Centralization vs. Decentralization in a Multi-Unit Organization: A Computational Model of a Retail Chain as a Multi-Agent Adaptive System

Myong-Hun Chang and Joseph Harrington

02-010: No Free Lunch Theorems for Search

David H. Wolpert and William G. Macready

02-010: Viral RNA and Evolved Mutational Robustness

Andreas Wagner and Peter F. Stadler

02-010: A Fast Monte Carlo Algorithm for Site or Bond Percolation

M. E. J. Newman and R. M. Ziff

02-009: Does Evolutionary Plasticity Evolve?

Andreas Wagner

02-009: Optimal Design, Robustness, and Risk Aversion

M. E. J. Newman, Michelle Girvan and J. Farmer

02-009: Combining Generalizers Using Partitions of the Learning Set

David H. Wolpert

02-009: Modeling Florentine Banking: Part I. Deposits and Loans

John F. Padgett

02-009: Anti-Stable Points and the Dynamics of Extended Systems

P.-M. Binder

02-009: Alarm Calls as Costly Signals of Anti-Predator Vigilance: The Watchful Babbler Game

Carl Bergstrom and Michael Lachmann

02-008: Evolving Better Representations Through Selective Genome Growth

Lee Altenberg

02-008: Evolving Protein Interaction Networks through Gene Duplication

Romualdo Pastor-Satorras, Eric Smith and Ricard V. Solé

02-008: Modeling Florentine Republicanism

John F. Padgett

02-008: On Emergence and Explanation

Nils A. Baas and Claus Emmeche

02-007: On the Use of Evidence in Neural Networks

David H. Wolpert

02-007: The Evolution of Evolvability in Genetic Programming

Lee Altenberg

02-007: Hybridized Crossover-Based Search Techniques for Program Discovery

Una-May O'Reilly and Franz Oppacher

02-007: Sunk-Cost Effects Made Ancient Societies Vulnerable to Collapse

Marco A. Janssen, Marten Scheffer and Timothy A. Kohler

02-006: Dynamics of Small Autocatalytic Reaction Networks II: Replication, Mutation and Catalysis

Peter F. Stadler, Wolfgang Schnabl, Christian V. Forst and Peter Schuster

02-006: Pathways to Randomness in the Economy: Emergent Nonlinearity and Chaos in Economics and Finance

William Brock

02-006: Mutational Robustness and Asymmetric Functional Specialization of Duplicate Genes

Andreas Wagner

02-006: Question Marks About the Period of Punctuation

Aviv Bergman and Marcus W. Feldman

02-005: Random Graphs as Models of Networks

M. E. J. Newman

02-005: On the Evolution of Learning

Aviv Bergman and Marcus Feldman

02-005: Local Minima in the Graph Bipartitioning Problem

Barbel Krakhofer and Peter F. Stadler

02-005: The Quasi-Periodic Oscillations and Low-Frequency Noise of Scorpius X-1 as Transient Chaos: A Dripping Handrail?

Jeffrey D. Scargle, David L. Donoho, James P. Crutchfield, Thomas Steiman-Cameron, James Imamura and Karl Young

02-004: HIV-1 Dynamics In Vivo: Virion Clearance Rate, Infected Cell Lifespan, and Viral Generation Time

Alan S. Perelson, Avidan U. Neumann, Martin Markowitz, John M. Leonard and David D. Ho

02-004: A Model of Individual Adaptive Behavior in a Fluctuating Environment

Lev A Zhivotovsky, Aviv Bergman and Marcus W. Feldman

02-003: Vulnerability to Noise of A Phase-Locked Oscillator Array

James Theiler, Steve Nichols and Kurt Wiesenfeld

02-003: NP Completeness of Kauffman's N-k Model, A Tuneable Rugged Fitness Landscape

Edward Weinberger

02-003: The Evolution of Evolvability in Genetic Linkage Patterns

John W. Pepper

02-002: A Model of Landscapes

Terry Jones

02-001: The Trouble Aspects of a Building Block Hypothesis for Genetic Programming

Una-May O'Reilly

01-014: System-Dependent Selection, Ecological Feedback, and the Emergence of Functional Structure in Ecosystems

J. Stephen Lansing, James N. Kremer and Barbara B. Smuts

01-013: Performing the Quantum Fourier Transform in Linear Parallel Time

Cristopher Moore

01-012: The New Empirics of Economic Growth

Steven Durlauf and Danny Quah

01-011: Minimal Cycle Bases of Outerplanar Graphs

Josef Leydold and Peter F. Stadler

01-010: Island Length Distribution in Genome Sequencing

O. E. Percus and J. K. Percus

01-009: Fixed Response Thresholds and the Regulation of Division of Labor in Insect Societies

Eric Bonabeau, Guy Theraulaz and Jean-Louis Deneubourg

01-009: Evolving Ant Colony Optimization

Hozefa M. Botee and Eric Bonabeau