Working Papers

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07-055: Cumulant Dynamics in a Finite Population: Linkage Equilibrium Theory

Magnus Rattray and Jonathan L. Shapiro

07-054: The Physical Limits of Communication

Michael Lachmann, M. E. J. Newman and Cristopher Moore

07-053: Localized Ethnic Conflict and Genocide: Accounting for Differences in Rwanda and Burundi

Ravi Bhavanani and David Backer

07-052: Using Adaptive Agent-Based Simulation Models to Assist Planners in Policy Development: The Case of Rent Control

Robert N. Bernard

07-051: Turbulent Landscapes: A Dialogue

James P. Crutchfield and Ned Kahn

07-051: Landscape Outcomes in a Model of Edge Effect Externalities: A Computational Economics Approach

Dawn Parker

07-050: Statistical Complexity of Simple 1D Spin Systems

James P. Crutchfield and David P. Feldman

07-050: Regional Mobility and Geography

Diego Comin

07-049: Efficiency and Equilibrium in Task Allocation Economics with Hierarchical Dependencies

William E. Walsh and Michael Wellman

07-049: Extinction: Bad Genes or Weak Chaos?

Ricard V. Sole, Jordi Bascompte and Susanna C. Manrubia

07-048: Immune Networks Modeled by Replicator Equations

Peter F. Stadler, Peter Schuster and Alan S. Perelson

07-048: Computational Political Economy

Ken Kollman, John H. Miller and Scott E. Page

07-048: Strategic Cost and ‘Matching Pennies’

Justin Smith

07-047: Estimating Functions of Probability Distributions From A Finite Set of Samples

David R. Wolf and David H. Wolpert

07-047: The Fourth Dimension of Life: Fractal Geometry and Allometric Scaling of Organisms

Geoffrey B. West, James H. Brown and Brian J. Enquist

07-047: Landscapes and Molecular Evolution

Peter Schuster

07-046: The Algebraic Theory of Recombination Spaces

Peter F. Stadler and Gunjter P. Wagner

07-046: Estimating Functions of Probability Distributions From A Finite Set of Samples

David H. Wolpert and David R. Wolf

07-046: Interchangeability of Relevant Cycles in Graphs

Petra M. Gleiss, Josef Leydold and Peter F. Stadler

07-045: Non-Linear Time-Series Prediction by Systematic Data Exporation on a Massively Parallel Computer

Xiru Zhang and Kurt Thearling

07-045: Quantitative Image Analysis of HIV-1 Infection in Lymphoid Tissue

Ashley T. Haase, Keith Henry, Mary Zupancic, Gerlad Sedgewick, Russell A. Faust, Holly Melroe, Winston Cavert, Kristin Gebhard, Katherine Staskus, Zhi-Qiang Zhang, Peter J. Dailey, Henry H. Balfour, Alejo Erice and Alan S. Perelson

07-045: From Sequences to Shapes and Back: A Case Study in RNA Secondary Structures

Peter Schuster, Walter Fontana, Peter F. Stadler and Ivo L. Hofacker

07-045: Resource Sharing and Coevolution in Evolving Cellular Automata

Justin Werfel, Melanie Mitchell and James P. Crutchfield

07-044: Computational Mechanics: Pattern and Prediction, Structure and Simplicity

Cosma Rohilla Shalizi and James P. Crutchfield

07-044: Assessing the Reliability of RNA folding Using Statistical Mechanics

Martijn Huynen, Robin Gutell and Danielle Konings

07-044: Temporally Asymmetric Fluctuations are Sufficient for the Operation of a Correlation Ratchet

Dante R. Chialvo and Mark M. Millonas

07-044: Fast Folding and Comparison of RNA Secondary Structures

Ivo L. Hofacker, Walter Fontana, Peter F. Stadler, L. Sebastian Bonhoeffer, Manfred Tacker and Peter Schuster

07-043: Iteration, Inequalities, and Differentiability in Analog Computers

Manuel Lameiras Campagnolo, Cristopher Moore and José Félix Costa

07-043: Testing for Nonlinearity in Weather Records

Milan Palu\v S

07-042: Relevant Cycles in Biopolymers and Random Graphs

Petra M. Gleiss and Peter F. Stadler

07-042: Random Graphs with Arbitrary Degree Distribution and Their Applications

M. E. J. Newman, S. H. Strogatz and D. J. Watts

07-041: The Small World Inside Large Metabolic Networks

Andreas Wagner and David Fell

07-041: Metastable Evolutionary Dynamics: Crossing Fitness Barriers or Escaping via Neutral Paths?

Erik van Nimwegen and James P. Crutchfield

07-040: Abstention in Dynamical Models of Spatial Voting

Baerbel M. R. Stadler

07-039: Effect of Interaction Topology and Activation Regime in Several Multi-Agent Systems

Robert Axtell

07-038: Organizational Genesis, Identity and Control: The Transformation of Banking in Renaissance Florence

John F. Padgett

07-037: Stabilization of Chaotic and Non-Permanent Food Web Dynamics

Richard J. Williams and Neo D. Martinez

07-037: The Structure of Scientific Collaboration Networks

M. E. J. Newman

07-036: Two Degrees of Separation in Complex Food Webs

Richard J. Williams, Neo D. Martinez, Eric L. Berlow, Jennifer A. Dunne and Albert-Laszlo Barabasi

07-036: Hits and Flops Dynamics

Gérard Weisbuch and Dietrich Stauffer

07-035: Information Bottlenecks, Causal States, and Statistical Relevance Bases: How to Represent Relevant Information in Memoryless Transduction

Cosma Rohilla Shalizi and James P. Crutchfield

07-035: Fast Approximation Algorithms for Finding Node-Independent Paths in Networks

Douglas White and M. E. J. Newman

07-034: Relatedness in Trait Group Models of Social Evolution

John Pepper

07-033: Landscape Statistics of the Low Autocorrelated Binary String Problem

Fernando F. Feirreira, José F. Fontanari and Peter F. Stadler

06-059: Concerning Relationships between Cerebral Blood Flow, Synaptic Pruning, and Early Mental Development in Animals and Humans

George A. Cowan

06-058: Automatic Detection of of Conserved Base Pairing Patterns in RNA Virus Genomes

Ivo L. Hofacker and Peter F. Stadler

06-057: Prediction of RNA Base Pairing Probabilities Using Massively Parallel Computers

Martin Fekete, Ivo L. Hofacker and Peter F. Stadler

06-056: Immunology for Physics

Alan S. Perelson and Gerard Weisbuch

06-056: Arborscapes: A Swarm-Based Multi-agent Ecological Disturbance Model

Melissa Savage and Manor Askenazi

06-055: Binding of Multivalent Ligands to Cells: Effects of Cell and Receptor Density

Bernhard Sulzer and Alan S. Perelson