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Statistical Applications in Genetics and Molecular Biology

2002 - 2020

Current editor(s): Michael P. H. Stumpf

From De Gruyter
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Volume 10, issue 1, 2011

Accuracy and Computational Efficiency of a Graphical Modeling Approach to Linkage Disequilibrium Estimation pp. 1-15 Downloads
Abel Haley J and Thomas Alun
Performance of Matrix Representation with Parsimony for Inferring Species from Gene Trees pp. 1-39 Downloads
Wang Yuancheng and Degnan James H
Fitting Boolean Networks from Steady State Perturbation Data pp. 1-40 Downloads
Almudevar Anthony, McCall Matthew N., McMurray Helene and Land Hartmut
Linear Combination Test for Hierarchical Gene Set Analysis pp. 1-18 Downloads
Wang Xiaoming, Dinu Irina, Liu Wei and Yasui Yutaka
Application of the Lasso to Expression Quantitative Trait Loci Mapping pp. 1-35 Downloads
Brown Andrew Anand, Richardson Sylvia and Whittaker John
A Two-Stage Poisson Model for Testing RNA-Seq Data pp. 1-26 Downloads
Auer Paul L. and Doerge Rebecca W
Smoothing Gene Expression Data with Network Information Improves Consistency of Regulated Genes pp. 1-26 Downloads
Dørum Guro, Snipen Lars, Solheim Margrete and Saebo Solve
Genetic Linkage Analysis in the Presence of Germline Mosaicism pp. 1-26 Downloads
Weissbrod Omer and Geiger Dan
Measurement of Evidence and Evidence of Measurement pp. 1-11 Downloads
Vieland Veronica J and Hodge Susan E
Exploratory Analysis of Multiple Omics Datasets Using the Adjusted RV Coefficient pp. 1-27 Downloads
Mayer Claus-Dieter, Lorent Julie and Horgan Graham W
Multiple Imputation of Missing Phenotype Data for QTL Mapping pp. 1-27 Downloads
Bobb Jennifer F, Scharfstein Daniel O., Daniels Michael J., Collins Francis S and Kelada Samir
Learning Monotonic Genotype-Phenotype Maps pp. 1-27 Downloads
Beerenwinkel Niko, Knupfer Patrick and Tresch Achim
High-Dimensional Regression and Variable Selection Using CAR Scores pp. 1-27 Downloads
Zuber Verena and Strimmer Korbinian
Determining Coding CpG Islands by Identifying Regions Significant for Pattern Statistics on Markov Chains pp. 1-27 Downloads
Singer Meromit, Engström Alexander, Schönhuth Alexander and Pachter Lior
Bayesian Learning from Marginal Data in Bionetwork Models pp. 1-27 Downloads
Bonassi Fernando V., You Lingchong and West Mike
Log-Linear Modelling of Protein Dipeptide Structure Reveals Interesting Patterns of Side-Chain-Backbone Interactions pp. 1-27 Downloads
Hommola Kerstin, Gilks Walter R. and Mardia Kanti V.
Meta-Analysis of Family-Based and Case-Control Genetic Association Studies that Use the Same Cases pp. 1-41 Downloads
Pantelis Bagos, Dimou Niki L, Liakopoulos Theodore D and Nikolopoulos Georgios K
Quantifying the Relative Contribution of the Heterozygous Class to QTL Detection Power pp. 1-19 Downloads
McClosky Benjamin, Ma Xiwen and Tanksley Steven D.
A Three Component Latent Class Model for Robust Semiparametric Gene Discovery pp. 1-19 Downloads
Alfo' Marco, Alessio Farcomeni and Tardella Luca
A Variance-Components Model for Distance-Matrix Phylogenetic Reconstruction pp. 1-36 Downloads
Gilks Walter R, Nye Tom M.W. and Lio Pietro
Large Sample Approximations of Probabilities of Correct Evolutionary Tree Estimation and Biases of Maximum Likelihood Estimation pp. 1-24 Downloads
Susko Edward
Imputation Estimators Partially Correct for Model Misspecification pp. 1-24 Downloads
Minin Vladimir N., O'Brien John D. and Seregin Arseni
Sparse Canonical Covariance Analysis for High-throughput Data pp. 1-24 Downloads
Lee Woojoo, Lee Donghwan, Lee Youngjo and Pawitan Yudi
A Calibrated Multiclass Extension of AdaBoost pp. 1-24 Downloads
Rubin Daniel B.
Random Forests for Genetic Association Studies pp. 1-34 Downloads
Goldstein Benjamin A, Polley Eric C and Briggs Farren B. S.
Assessing Modularity Using a Random Matrix Theory Approach pp. 1-34 Downloads
Feher Kristen, Whelan James and Müller Samuel
Interval Estimation of Familial Correlations from Pedigrees pp. 1-29 Downloads
Mathew George, Song Yeunjoo and Elston Robert
Weighted Lasso with Data Integration pp. 1-29 Downloads
Bergersen Linn Cecilie, Glad Ingrid K. and Lyng Heidi
On the Statistical Properties of SGoF Multitesting Method pp. 1-30 Downloads
Jacobo de Uña-Alvarez
Inferring Gene Networks using Robust Statistical Techniques pp. 1-30 Downloads
Nadadoor Venkat R., Ben-Zvi Amos and Shah Sirish L.
Surveying the Manifold Divergence of an Entire Protein Class for Statistical Clues to Underlying Biochemical Mechanisms pp. 1-30 Downloads
Neuwald Andrew F.
Modeling Read Counts for CNV Detection in Exome Sequencing Data pp. 1-30 Downloads
Love Michael I., Alena Myšičková, Sun Ruping, Kalscheuer Vera, Vingron Martin and Haas Stefan A.
Information Metrics in Genetic Epidemiology pp. 1-20 Downloads
Tritchler David L, Sucheston Lara, Chanda Pritam and Ramanathan Murali
False Discovery Rate Estimation for Stability Selection: Application to Genome-Wide Association Studies pp. 1-20 Downloads
Ahmed Ismaïl, Hartikainen Anna-Liisa, Järvelin Marjo-Riitta and Richardson Sylvia
Entropy Based Genetic Association Tests and Gene-Gene Interaction Tests pp. 1-21 Downloads
Mariza de Andrade and Wang Xin
Adaptive Elastic-Net Sparse Principal Component Analysis for Pathway Association Testing pp. 1-21 Downloads
Chen Xi
Multiple Testing in Candidate Gene Situations: A Comparison of Classical, Discrete, and Resampling-Based Procedures pp. 1-21 Downloads
Elsäßer Amelie, Victor Anja and Hommel Gerhard
A Markov-Chain Model for the Analysis of High-Resolution Enzymatically 18O-Labeled Mass Spectra pp. 1-37 Downloads
Valkenborg Dirk and Burzykowski Tomasz
Analyzing Time-Course Microarray Data Using Functional Data Analysis - A Review pp. 1-32 Downloads
Coffey Norma and Hinde John
Multiscale Characterization of Signaling Network Dynamics through Features pp. 1-32 Downloads
Capobianco Enrico, Marras Elisabetta and Travaglione Antonella
Learning from Past Treatments and Their Outcome Improves Prediction of In Vivo Response to Anti-HIV Therapy pp. 1-32 Downloads
Saigo Hiroto, Altmann Andre, Bogojeska Jasmina, Müller Fabian, Nowozin Sebastian and Lengauer Thomas
A Robust Statistical Method to Detect Null Alleles in Microsatellite and SNP Datasets in Both Panmictic and Inbred Populations pp. 1-10 Downloads
Girard Philippe
The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq pp. 1-28 Downloads
Di Yanming, Schafer Daniel W, Cumbie Jason S and Chang Jeff H
Disequilibrium Coefficient: A Bayesian Perspective pp. 1-22 Downloads
Brentani Helena, Nakano Eduardo Y, Martins Camila B, Izbicki Rafael and Pereira Carlos Alberto
The Joint Null Criterion for Multiple Hypothesis Tests pp. 1-22 Downloads
Leek Jeffrey T and Storey John D.
Fully Moderated T-statistic for Small Sample Size Gene Expression Arrays pp. 1-22 Downloads
Yu Lianbo, Gulati Parul, Fernandez Soledad, Pennell Michael, Kirschner Lawrence and Jarjoura David
Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome pp. 1-22 Downloads
Bérard Caroline, Martin-Magniette Marie-Laure, Brunaud Véronique, Aubourg Sébastien and Robin Stéphane
Comparison of Clinical Subgroup aCGH Profiles through Pseudolikelihood Ratio Tests pp. 1-23 Downloads
Engler David, Shen Yiping, Gusella James and Betensky Rebecca A.
A Comparison of Multifactor Dimensionality Reduction and L1-Penalized Regression to Identify Gene-Gene Interactions in Genetic Association Studies pp. 1-23 Downloads
Winham Stacey, Wang Chong and Motsinger-Reif Alison A
MA-SNP -- A New Genotype Calling Method for Oligonucleotide SNP Arrays Modeling the Batch Effect with a Normal Mixture Model pp. 1-23 Downloads
Wen Yalu, Li Ming and Fu Wenjiang J
Choice of Summary Statistic Weights in Approximate Bayesian Computation pp. 1-23 Downloads
Jung Hsuan and Marjoram Paul
Repeated Measures Semiparametric Regression Using Targeted Maximum Likelihood Methodology with Application to Transcription Factor Activity Discovery pp. 1-31 Downloads
Tuglus Catherine and J. van der Laan Mark
A Non-Parametric Method for Detecting Specificity Determining Sites in Protein Sequence Alignments pp. 1-31 Downloads
Gilks Walter R and Wang Chinying
Deviance Information Criteria for Model Selection in Approximate Bayesian Computation pp. 1-25 Downloads
Francois Olivier and Laval Guillaume
A Modified Maximum Contrast Method for Unequal Sample Sizes in Pharmacogenomic Studies pp. 1-25 Downloads
Nagashima Kengo, Sato Yasunori and Hamada Chikuma
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