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Statistical Applications in Genetics and Molecular Biology

2002 - 2020

Current editor(s): Michael P. H. Stumpf

From De Gruyter
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Volume 9, issue 1, 2010

Network Enrichment Analysis in Complex Experiments pp. 1-36 Downloads
Shojaie Ali and Michailidis George
Sub-Modular Resolution Analysis by Network Mixture Models pp. 1-43 Downloads
Marras Elisabetta, Travaglione Antonella and Capobianco Enrico
The Detection of Blur in Affymetrix GeneChips pp. 1-19 Downloads
Upton Graham J. G. and Harrison Andrew P
Reconstructability Analysis as a Tool for Identifying Gene-Gene Interactions in Studies of Human Diseases pp. 1-27 Downloads
Shervais Stephen, Kramer Patricia L, Westaway Shawn K., Cox Nancy J and Zwick Martin
Locating Multiple Interacting Quantitative Trait Loci with the Zero-Inflated Generalized Poisson Regression pp. 1-27 Downloads
Erhardt Vinzenz, Bogdan Malgorzata and Czado Claudia
Optimisation of HMM Topologies Enhances DNA and Protein Sequence Modelling pp. 1-27 Downloads
Friedrich Torben, Koetschan Christian and Müller Tobias
Optimal Tests Shrinking Both Means and Variances Applicable to Microarray Data Analysis pp. 1-35 Downloads
Hwang J.T. Gene and Liu Peng
Sparse Partial Least Squares Classification for High Dimensional Data pp. 1-32 Downloads
Chung Dongjun and Keles Sunduz
A Random Coefficients Model for Regional Co-Expression Associated with DNA Copy Number pp. 1-30 Downloads
N van Wieringen Wessel, Berkhof Johannes and A van de Wiel Mark
Lasso Logistic Regression, GSoft and the Cyclic Coordinate Descent Algorithm: Application to Gene Expression Data pp. 1-30 Downloads
Garcia-Magariños Manuel, Antoniadis Anestis, Cao Ricardo and González-Manteiga Wenceslao
Shrinkage Estimation of Effect Sizes as an Alternative to Hypothesis Testing Followed by Estimation in High-Dimensional Biology: Applications to Differential Gene Expression pp. 1-33 Downloads
Montazeri Zahra, Yanofsky Corey M. and Bickel David R.
Buckley-James Boosting for Survival Analysis with High-Dimensional Biomarker Data pp. 1-33 Downloads
Wang Zhu and Wang C.Y.
Epistatic Interactions pp. 1-24 Downloads
VanderWeele Tyler J
Trilocus Disequilibrium Analysis of Multiallelic Markers in Outcrossing Populations pp. 1-24 Downloads
Berg Arthur, He Qiuling, Shen Ye, Chen Ying, Huang Minren and Wu Rongling
Granger Causality Analysis of Human Cell-Cycle Gene Expression Profiles pp. 1-24 Downloads
Nagarajan Radhakrishnan and Upreti Meenakshi
Weighted-LASSO for Structured Network Inference from Time Course Data pp. 1-29 Downloads
Charbonnier Camille, Chiquet Julien and Ambroise Christophe
Testing for Gene-Gene Interaction with AMMI Models pp. 1-29 Downloads
Barhdadi Amina and Dubé Marie-Pierre
The Apportionment of Total Genetic Variation by Categorical Analysis of Variance pp. 1-34 Downloads
Khang Tsung Fei and Yap Von Bing
Assessment of LD Matrix Measures for the Analysis of Biological Pathway Association pp. 1-46 Downloads
Crosslin David R., Qin Xuejun and Hauser Elizabeth R.
On Optimal Selection of Summary Statistics for Approximate Bayesian Computation pp. 1-16 Downloads
Nunes Matthew A and Balding David J
Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn pp. 1-16 Downloads
Phipson Belinda and Smyth Gordon K
A Bayesian Hierarchical Model for Quantitative Real-Time PCR Data pp. 1-21 Downloads
Follestad Turid, Jørstad Tommy S, Erlandsen Sten E, Sandvik Arne K, Bones Atle M and Langaas Mette
Mapping Quantitative Trait Loci in a Non-Equilibrium Population pp. 1-21 Downloads
Wu Song, Yang Jie and Wu Rongling
Parameter Estimation in Multiple-Hidden I.I.D. Models from Biological Multiple Alignment pp. 1-37 Downloads
Arribas-Gil Ana
An Empirical Bayesian Method for Estimating Biological Networks from Temporal Microarray Data pp. 1-28 Downloads
Rau Andrea, Jaffrézic Florence, Foulley Jean-Louis and Doerge Rebecca W
An Alternative Model of Type A Dependence in a Gene Set of Correlated Genes pp. 1-12 Downloads
Lim Johan, Kim Jayeon and Kim Byung Soo
On the Optimal Design of Genetic Variant Discovery Studies pp. 1-17 Downloads
Ionita-Laza Iuliana and Laird Nan M
Detecting Genotyping Error Using Measures of Degree of Hardy-Weinberg Disequilibrium pp. 1-17 Downloads
Attia John, Thakkinstian Ammarin, McElduff Patrick, Milne Elizabeth, Dawson Somer, Scott Rodney J, Klerk Nicholas de, Armstrong Bruce and Thompson John
Generalizing Moving Averages for Tiling Arrays Using Combined P-Value Statistics pp. 1-31 Downloads
Kechris Katerina J, Biehs Brian and Kornberg Thomas B
Informative or Noninformative Calls for Gene Expression: A Latent Variable Approach pp. 1-31 Downloads
Kasim Adetayo, Lin Dan, Suzy Van Sanden, Clevert Djork-Arné, Bijnens Luc, Göhlmann Hinrich, Amaratunga Dhammika, Hochreiter Sepp, Shkedy Ziv and Talloen Willem
An Internal Calibration Method for Protein-Array Studies pp. 1-23 Downloads
Daly Don Simone, Anderson Kevin K, Seurynck-Servoss Shannon L, Gonzalez Rachel M, White Amanda M and Zangar Richard C
Confidently Estimating the Number of DNA Replication Origins pp. 1-23 Downloads
Bhaskar Anand and Keich Uri
Regression-Based Multi-Trait QTL Mapping Using a Structural Equation Model pp. 1-23 Downloads
Mi Xiaojuan, Eskridge Kent, Wang Dong, Baenziger P. Stephen, Campbell B. Todd, Gill Kulvinder S., Dweikat Ismail and Bovaird James
Predicting Patient Survival from Longitudinal Gene Expression pp. 1-23 Downloads
Zhang Yuping, Tibshirani Robert J. and Davis Ronald W.
Asymptotic Distribution of the "Orthogonal" Quantitative Transmission Disequilibrium Test in a Structured Population: Exact Formula pp. 1-25 Downloads
Boitard Simon, Mangin Brigitte and Azaïs Jean-Marc
Space Oriented Rank-Based Data Integration pp. 1-25 Downloads
Lin Shili
Spatial Clustering of Array CGH Features in Combination with Hierarchical Multiple Testing pp. 1-25 Downloads
Kim Kyung In, Roquain Etienne and A van de Wiel Mark
Including Probe-Level Measurement Error in Robust Mixture Clustering of Replicated Microarray Gene Expression pp. 1-25 Downloads
Liu Xuejun and Rattray Magnus
Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis pp. 1-22 Downloads
Wang Chaolong, Szpiech Zachary A, Degnan James H, Jakobsson Mattias, Pemberton Trevor J, Hardy John A, Singleton Andrew B and Rosenberg Noah A
Dealing with Heterogeneity between Cohorts in Genomewide SNP Association Studies pp. 1-22 Downloads
Lebrec Jeremie J, Stijnen Theo and C van Houwelingen Hans
The Generalized Odds Ratio as a Measure of Genetic Risk Effect in the Analysis and Meta-Analysis of Association Studies pp. 1-14 Downloads
Zintzaras Elias
Classification of Genomic Sequences via Wavelet Variance and a Self-Organizing Map with an Application to Mitochondrial DNA pp. 1-14 Downloads
Jach Agnieszka E and Marín Juan M

Volume 8, issue 1, 2009

Calculating Asymptotic Significance Levels of the Constrained Likelihood Ratio Test with Application to Multivariate Genetic Linkage Analysis pp. 1-32 Downloads
Morris Nathan J, Elston Robert and Stein Catherine M
Ancestral Recombination Graphs under Non-Random Ascertainment, with Applications to Gene Mapping pp. 1-44 Downloads
Hössjer Ola, Hartman Linda and Humphreys Keith
Dimension Reduction of Microarray Data in the Presence of a Censored Survival Response: A Simulation Study pp. 1-38 Downloads
Nguyen Tuan S and Rojo Javier
Inferring Dynamic Genetic Networks with Low Order Independencies pp. 1-38 Downloads
Lèbre Sophie
Characterizing the D2 Statistic: Word Matches in Biological Sequences pp. 1-21 Downloads
Forêt Sylvain, Wilson Susan R and Burden Conrad J
Statistical Screening Method for Genetic Factors Influencing Susceptibility to Common Diseases in a Two-Stage Genome-Wide Association Study pp. 1-21 Downloads
Sato Yasunori, Laird Nan, Suganami Hideki, Hamada Chikuma, Niki Naoto, Yoshimura Isao and Yoshida Teruhiko
Transmission Disequilibrium Test Power and Sample Size in the Presence of Locus Heterogeneity pp. 1-16 Downloads
Chen Chuanwen, Yang Guang, Buyske Steven, Matise Tara, Finch Stephen J and Gordon Derek
Sparse Canonical Correlation Analysis with Application to Genomic Data Integration pp. 1-34 Downloads
Parkhomenko Elena, Tritchler David and Beyene Joseph
Two-Stage Model-Based Clustering for Liquid Chromatography Mass Spectrometry Data Analysis pp. 1-34 Downloads
Łuksza Marta, Kluge Bogusław, Ostrowski Jerzy, Karczmarski Jakub and Gambin Anna
Prediction of Motifs Based on a Repeated-Measures Model for Integrating Cross-Species Sequence and Expression Data pp. 1-34 Downloads
Siewert Elizabeth A and Kechris Katerina J
Detecting Outlier Samples in Microarray Data pp. 1-24 Downloads
Shieh Albert D and Hung Yeung Sam
Rotation Testing in Gene Set Enrichment Analysis for Small Direct Comparison Experiments pp. 1-24 Downloads
Dørum Guro, Snipen Lars, Solheim Margrete and Sæbø Solve
Sequential Analysis for Microarray Data Based on Sensitivity and Meta-Analysis pp. 1-33 Downloads
Marot Guillemette and Mayer Claus-Dieter
Incorporating Duplicate Genotype Data into Linear Trend Tests of Genetic Association: Methods and Cost-Effectiveness pp. 1-20 Downloads
Borchers Bryce, Brown Marshall, McLellan Brian, Bekmetjev Airat and Tintle Nathan L
Adaptive Transmission Disequilibrium Test for Family Trio Design pp. 1-20 Downloads
Yuan Min, Tian Xin, Zheng Gang and Yang Yaning
Model Selection Based on FDR-Thresholding Optimizing the Area under the ROC-Curve pp. 1-20 Downloads
Graf Alexandra C. and Bauer Peter
M-quantile Regression Analysis of Temporal Gene Expression Data pp. 1-20 Downloads
Vinciotti Veronica and Yu Keming
Composite Likelihood Modeling of Neighboring Site Correlations of DNA Sequence Substitution Rates pp. 1-20 Downloads
Deng Ling and Moore Dirk F.
Testing of Chromosomal Clumping of Gene Properties pp. 1-27 Downloads
Fernandez-Ricaud Luciano, Dalevi Daniel, Blomberg Anders and Nerman Olle
Bayesian Unsupervised Learning with Multiple Data Types pp. 1-27 Downloads
Agius Phaedra, Ying Yiming and Campbell Colin
Extensions of Sparse Canonical Correlation Analysis with Applications to Genomic Data pp. 1-27 Downloads
Witten Daniela M and Tibshirani Robert J.
Identifying Individuals in a Complex Mixture of DNA with Unknown Ancestry pp. 1-27 Downloads
Sampson Joshua and Zhao Hongyu
Modeling Dependence in Methylation Patterns with Application to Ovarian Carcinomas pp. 1-27 Downloads
Lacey Michelle R and Ehrlich Melanie
Balanced Gradient Boosting from Imbalanced Data for Clinical Outcome Prediction pp. 1-19 Downloads
Teramoto Reiji
Hypothesis Tests for Point-Mass Mixture Data with Application to `Omics Data with Many Zero Values pp. 1-43 Downloads
Taylor Sandra and Pollard Katherine
A Non-Homogeneous Hidden-State Model on First Order Differences for Automatic Detection of Nucleosome Positions pp. 1-45 Downloads
Kuan Pei Fen, Huebert Dana, Gasch Audrey and Keles Sunduz
Orthology-Based Multilevel Modeling of Differentially Expressed Mouse and Human Gene Pairs pp. 1-47 Downloads
Ogorek Benjamin A and Stefanski Leonard A
A Parametric Model for Analyzing Anticipation in Genetically Predisposed Families pp. 1-11 Downloads
Larsen Klaus, Petersen Janne, Bernstein Inge and Nilbert Mef
A Multiple Testing Approach to High-Dimensional Association Studies with an Application to the Detection of Associations between Risk Factors of Heart Disease and Genetic Polymorphisms pp. 1-56 Downloads
Ferreira José A., Berkhof Johannes, Souverein Olga and Zwinderman Koos
Univariate Shrinkage in the Cox Model for High Dimensional Data pp. 1-18 Downloads
Tibshirani Robert J.
A Unified Mixed Effects Model for Gene Set Analysis of Time Course Microarray Experiments pp. 1-18 Downloads
Wang Lily, Chen Xi, Wolfinger Russell D, Franklin Jeffrey L, Coffey Robert J and Zhang Bing
Score Statistics for Mapping Quantitative Trait Loci pp. 1-35 Downloads
Chang Myron N, Wu Rongling, Wu Samuel S and Casella George
A Bayesian Analysis Strategy for Cross-Study Translation of Gene Expression Biomarkers pp. 1-26 Downloads
Lucas Joseph, Carvalho Carlos and West Mike
A Multivariate Growth Curve Model for Ranking Genes in Replicated Time Course Microarray Data pp. 1-26 Downloads
Hamid Jemila S and Beyene Joseph
Modified FDR Controlling Procedure for Multi-Stage Analyses pp. 1-15 Downloads
Tuglus Catherine and J. van der Laan Mark
Increase of Rejection Rate in Case-Control Studies with the Differential Genotyping Error Rates pp. 1-9 Downloads
Ahn Kwangmi, Gordon Derek and Finch Stephen J
A Multilocus Model for Constructing a Linkage Disequilibrium Map in Human Populations pp. 1-25 Downloads
Li Qin and Wu Rongling
A Nonlinear Mixed-Effects Model for Estimating Calibration Intervals for Unknown Concentrations in Two-Color Microarray Data with Spike-Ins pp. 1-25 Downloads
Thilakarathne Pushpike J, Verbeke Geert, Engelen Kristof and Marchal Kathleen
Normalization Method for Transcriptional Studies of Heterogeneous Samples - Simultaneous Array Normalization and Identification of Equivalent Expression pp. 1-23 Downloads
Qin Li-Xuan and Satagopan Jaya M
Multilevel Comparison of Dendrograms: A New Method with an Application for Genetic Classifications pp. 1-14 Downloads
Podani János, Engloner Attila and Major Agnes
Survival Analysis with High-Dimensional Covariates: An Application in Microarray Studies pp. 1-22 Downloads
Engler David and Li Yi
Weighted Multiple Hypothesis Testing Procedures pp. 1-22 Downloads
Kang Guolian, Ye Keying, Liu Nianjun, Allison David B. and Gao Guimin
Estimation of Selection Intensity under Overdominance by Bayesian Methods pp. 1-22 Downloads
Buzbas Erkan Ozge, Joyce Paul and Abdo Zaid
A Statistical Model for Genetic Mapping of Viral Infection by Integrating Epidemiological Behavior pp. 1-22 Downloads
Li Yao, Berg Arthur, Chang Myron N, Du Ping, Ahn Kwangmi, Mauger David, Liao Duanping and Wu Rongling
Impact of Population Stratification on Family-Based Association Tests with Longitudinal Measurements pp. 1-17 Downloads
Ding Xiao, Weiss Scott, Raby Benjamin, Lange Christoph and Laird Nan M
MC-Normalization: A Novel Method for Dye-Normalization of Two-Channel Microarray Data pp. 1-28 Downloads
Landfors Mattias, Fahlén Jessica and Rydén Patrik
A Regularized Regression Approach for Dissecting Genetic Conflicts that Increase Disease Risk in Pregnancy pp. 1-28 Downloads
Li Shaoyu, Lu Qing, Fu Wenjiang, Romero Roberto and Cui Yuehua
Page updated 2021-05-14