Statistical Applications in Genetics and Molecular Biology

2002 - 2024

Current editor(s): Michael P. H. Stumpf

From De Gruyter
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Volume 10, issue 1, 2011

The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq pp. 1-28

Di Yanming, Schafer Daniel W, Cumbie Jason S and Chang Jeff H

A Markov-Chain Model for the Analysis of High-Resolution Enzymatically O-Labeled Mass Spectra pp. 1-37

Valkenborg Dirk and Burzykowski Tomasz

Entropy Based Genetic Association Tests and Gene-Gene Interaction Tests pp. 1-21

Mariza de Andrade and Wang Xin

Adaptive Elastic-Net Sparse Principal Component Analysis for Pathway Association Testing pp. 1-21

Chen Xi

Multiple Testing in Candidate Gene Situations: A Comparison of Classical, Discrete, and Resampling-Based Procedures pp. 1-21

Elsäßer Amelie, Victor Anja and Hommel Gerhard

Disequilibrium Coefficient: A Bayesian Perspective pp. 1-22

Brentani Helena, Nakano Eduardo Y, Martins Camila B, Izbicki Rafael and Pereira Carlos Alberto

The Joint Null Criterion for Multiple Hypothesis Tests pp. 1-22

Leek Jeffrey T and Storey John D.

Fully Moderated T-statistic for Small Sample Size Gene Expression Arrays pp. 1-22

Yu Lianbo, Gulati Parul, Fernandez Soledad, Pennell Michael, Kirschner Lawrence and Jarjoura David

Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome pp. 1-22

Bérard Caroline, Martin-Magniette Marie-Laure, Brunaud Véronique, Aubourg Sébastien and Robin Stéphane

Performance of Matrix Representation with Parsimony for Inferring Species from Gene Trees pp. 1-39

Wang Yuancheng and Degnan James H

Quantifying the Relative Contribution of the Heterozygous Class to QTL Detection Power pp. 1-19

McClosky Benjamin, Ma Xiwen and Tanksley Steven D.

A Three Component Latent Class Model for Robust Semiparametric Gene Discovery pp. 1-19

Alfo' Marco, Alessio Farcomeni and Tardella Luca

Fitting Boolean Networks from Steady State Perturbation Data pp. 1-40

Almudevar Anthony, McCall Matthew N., McMurray Helene and Land Hartmut

A Robust Statistical Method to Detect Null Alleles in Microsatellite and SNP Datasets in Both Panmictic and Inbred Populations pp. 1-10

Girard Philippe

Random Forests for Genetic Association Studies pp. 1-34

Goldstein Benjamin A, Polley Eric C and Briggs Farren B. S.

Assessing Modularity Using a Random Matrix Theory Approach pp. 1-34

Feher Kristen, Whelan James and Müller Samuel

Accuracy and Computational Efficiency of a Graphical Modeling Approach to Linkage Disequilibrium Estimation pp. 1-15

Abel Haley J and Thomas Alun

Application of the Lasso to Expression Quantitative Trait Loci Mapping pp. 1-35

Brown Andrew Anand, Richardson Sylvia and Whittaker John

On the Statistical Properties of SGoF Multitesting Method pp. 1-30

Jacobo de Uña-Alvarez

Inferring Gene Networks using Robust Statistical Techniques pp. 1-30

Nadadoor Venkat R., Ben-Zvi Amos and Shah Sirish L.

Surveying the Manifold Divergence of an Entire Protein Class for Statistical Clues to Underlying Biochemical Mechanisms pp. 1-30

Neuwald Andrew F.

Interval Estimation of Familial Correlations from Pedigrees pp. 1-29

Mathew George, Song Yeunjoo and Elston Robert

Weighted Lasso with Data Integration pp. 1-29

Bergersen Linn Cecilie, Glad Ingrid K. and Lyng Heidi

Analyzing Time-Course Microarray Data Using Functional Data Analysis - A Review pp. 1-32

Coffey Norma and Hinde John

Multiscale Characterization of Signaling Network Dynamics through Features pp. 1-32

Capobianco Enrico, Marras Elisabetta and Travaglione Antonella

Learning from Past Treatments and Their Outcome Improves Prediction of In Vivo Response to Anti-HIV Therapy pp. 1-32

Saigo Hiroto, Altmann Andre, Bogojeska Jasmina, Müller Fabian, Nowozin Sebastian and Lengauer Thomas

Large Sample Approximations of Probabilities of Correct Evolutionary Tree Estimation and Biases of Maximum Likelihood Estimation pp. 1-24

Susko Edward

Imputation Estimators Partially Correct for Model Misspecification pp. 1-24

Minin Vladimir N., O'Brien John D. and Seregin Arseni

Sparse Canonical Covariance Analysis for High-throughput Data pp. 1-24

Lee Woojoo, Lee Donghwan, Lee Youngjo and Pawitan Yudi

A Calibrated Multiclass Extension of AdaBoost pp. 1-24

Rubin Daniel B.

Information Metrics in Genetic Epidemiology pp. 1-20

Tritchler David L, Sucheston Lara, Chanda Pritam and Ramanathan Murali

False Discovery Rate Estimation for Stability Selection: Application to Genome-Wide Association Studies pp. 1-20

Ahmed Ismaïl, Hartikainen Anna-Liisa, Järvelin Marjo-Riitta and Richardson Sylvia

Deviance Information Criteria for Model Selection in Approximate Bayesian Computation pp. 1-25

Francois Olivier and Laval Guillaume

A Modified Maximum Contrast Method for Unequal Sample Sizes in Pharmacogenomic Studies pp. 1-25

Nagashima Kengo, Sato Yasunori and Hamada Chikuma

Linear Combination Test for Hierarchical Gene Set Analysis pp. 1-18

Wang Xiaoming, Dinu Irina, Liu Wei and Yasui Yutaka

Meta-Analysis of Family-Based and Case-Control Genetic Association Studies that Use the Same Cases pp. 1-41

Pantelis Bagos, Dimou Niki L, Liakopoulos Theodore D and Nikolopoulos Georgios K

A Two-Stage Poisson Model for Testing RNA-Seq Data pp. 1-26

Auer Paul L. and Doerge Rebecca W

Smoothing Gene Expression Data with Network Information Improves Consistency of Regulated Genes pp. 1-26

Dørum Guro, Snipen Lars, Solheim Margrete and Saebo Solve

Genetic Linkage Analysis in the Presence of Germline Mosaicism pp. 1-26

Weissbrod Omer and Geiger Dan

Comparison of Clinical Subgroup aCGH Profiles through Pseudolikelihood Ratio Tests pp. 1-23

Engler David, Shen Yiping, Gusella James and Betensky Rebecca A.

A Comparison of Multifactor Dimensionality Reduction and L1-Penalized Regression to Identify Gene-Gene Interactions in Genetic Association Studies pp. 1-23

Winham Stacey, Wang Chong and Motsinger-Reif Alison A

MA-SNP -- A New Genotype Calling Method for Oligonucleotide SNP Arrays Modeling the Batch Effect with a Normal Mixture Model pp. 1-23

Wen Yalu, Li Ming and Fu Wenjiang J

Choice of Summary Statistic Weights in Approximate Bayesian Computation pp. 1-23

Jung Hsuan and Marjoram Paul

Exploratory Analysis of Multiple Omics Datasets Using the Adjusted RV Coefficient pp. 1-27

Mayer Claus-Dieter, Lorent Julie and Horgan Graham W

Multiple Imputation of Missing Phenotype Data for QTL Mapping pp. 1-27

Bobb Jennifer F, Scharfstein Daniel O., Daniels Michael J., Collins Francis S and Kelada Samir

Learning Monotonic Genotype-Phenotype Maps pp. 1-27

Beerenwinkel Niko, Knupfer Patrick and Tresch Achim

High-Dimensional Regression and Variable Selection Using CAR Scores pp. 1-27

Zuber Verena and Strimmer Korbinian

Determining Coding CpG Islands by Identifying Regions Significant for Pattern Statistics on Markov Chains pp. 1-27

Singer Meromit, Engström Alexander, Schönhuth Alexander and Pachter Lior

Bayesian Learning from Marginal Data in Bionetwork Models pp. 1-27

Bonassi Fernando V., You Lingchong and West Mike

Log-Linear Modelling of Protein Dipeptide Structure Reveals Interesting Patterns of Side-Chain-Backbone Interactions pp. 1-27

Hommola Kerstin, Gilks Walter R. and Mardia Kanti V.

Measurement of Evidence and Evidence of Measurement pp. 1-11

Vieland Veronica J and Hodge Susan E

Repeated Measures Semiparametric Regression Using Targeted Maximum Likelihood Methodology with Application to Transcription Factor Activity Discovery pp. 1-31

Tuglus Catherine and J. van der Laan Mark

A Non-Parametric Method for Detecting Specificity Determining Sites in Protein Sequence Alignments pp. 1-31

Gilks Walter R and Wang Chinying

Modeling Read Counts for CNV Detection in Exome Sequencing Data pp. 30

Love Michael I., Alena Myšičková, Sun Ruping, Kalscheuer Vera, Vingron Martin and Haas Stefan A.

A Variance-Components Model for Distance-Matrix Phylogenetic Reconstruction pp. 36

Gilks Walter R, Nye Tom M.W. and Lio Pietro