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Statistical Applications in Genetics and Molecular Biology

2002 - 2020

Current editor(s): Michael P. H. Stumpf

From De Gruyter
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Volume 7, issue 2, 2008

Breast Cancer Diagnosis from Proteomic Mass Spectrometry Data: A Comparative Evaluation pp. 1-23 Downloads
Hand David J
Case-Control Breast Cancer Study of MALDI-TOF Proteomic Mass Spectrometry Data on Serum Samples pp. 1-14 Downloads
J. van der Werff Martijn P., Mertens Bart, E de Noo Mirre, Bladergroen Marco R, Dalebout Hans C, Tollenaar Rob A. E. M. and Deelder Andre M
Classification of Breast Cancer versus Normal Samples from Mass Spectrometry Profiles Using Linear Discriminant Analysis of Important Features Selected by Random Forest pp. 1-14 Downloads
Datta Somnath
Assessing the Validity Domains of Graphical Gaussian Models in Order to Infer Relationships among Components of Complex Biological Systems pp. 1-37 Downloads
Villers Fanny, Schaeffer Brigitte, Bertin Caroline and Huet Sylvie
A Cross-Validation Study to Select a Classification Procedure for Clinical Diagnosis Based on Proteomic Mass Spectrometry pp. 1-22 Downloads
Valkenborg Dirk, Suzy Van Sanden, Lin Dan, Kasim Adetayo, Zhu Qi, Haldermans Philippe, Jansen Ivy, Shkedy Ziv and Burzykowski Tomasz
Application of the Random Forest Classification Method to Peaks Detected from Mass Spectrometric Proteomic Profiles of Cancer Patients and Controls pp. 1-22 Downloads
Barrett Jennifer H and Cairns David A
Empirical Bayes Logistic Regression pp. 1-16 Downloads
Strimenopoulou Foteini and Brown Philip J
Organizing a Competition on Clinical Mass Spectrometry Based Proteomic Diagnosis pp. 1-20 Downloads
Mertens Bart
Autocorrelated Logistic Ridge Regression for Prediction Based on Proteomics Spectra pp. 1-12 Downloads
Goeman Jelle J
Clinical Mass Spectrometry Proteomic Diagnosis by Conformal Predictors pp. 1-12 Downloads
Gammerman Alex, Nouretdinov Ilia, Burford Brian, Chervonenkis Alexey, Vovk Vladimir and Luo Zhiyuan
Support Vector Machine Approach to Separate Control and Breast Cancer Serum Samples pp. 1-11 Downloads
Pham Thang V, A van de Wiel Mark and Jimenez Connie R
Developing a Discrimination Rule between Breast Cancer Patients and Controls Using Proteomics Mass Spectrometric Data: A Three-Step Approach pp. 1-11 Downloads
Heidema A. Geert and Nagelkerke Nico
A Classification Model for the Leiden Proteomics Competition pp. 1-11 Downloads
Hoefsloot Huub C. J., Smit Suzanne and Smilde Age K.
Principal Component Discriminant Analysis pp. 1-6 Downloads
Fearn Tom
International Competition on Mass Spectrometry Proteomic Diagnosis pp. 1-4 Downloads
Mertens Bart

Volume 7, issue 1, 2008

Approximately Sufficient Statistics and Bayesian Computation pp. 1-18 Downloads
Joyce Paul and Marjoram Paul
Importance Sampling for the Infinite Sites Model pp. 1-26 Downloads
Hobolth Asger, Uyenoyama Marcy K and Wiuf Carsten
A Unification of Multivariate Methods for Meta-Analysis of Genetic Association Studies pp. 1-35 Downloads
Pantelis Bagos
TRAB: Testing Whether Mutation Frequencies Are Above an Unknown Background pp. 1-11 Downloads
Parmigiani Giovanni, Chen Sining and Velculescu Victor E.
Correcting the Estimated Level of Differential Expression for Gene Selection Bias: Application to a Microarray Study pp. 1-27 Downloads
Bickel David R.
Addressing the Shortcomings of Three Recent Bayesian Methods for Detecting Interspecific Recombination in DNA Sequence Alignments pp. 1-41 Downloads
Husmeier Dirk and Mantzaris Alexander V.
A SNP Streak Model for the Identification of Genetic Regions Identical-by-descent pp. 1-19 Downloads
Leibon Gregory, Rockmore Daniel N and Pollak Martin R
Reducing Spatial Flaws in Oligonucleotide Arrays by Using Neighborhood Information pp. 1-19 Downloads
Arteaga-Salas Jose Manuel, Harrison Andrew P and Upton Graham J. G.
Accommodating Uncertainty in a Tree Set for Function Estimation pp. 1-19 Downloads
Healy Brian C, DeGruttola Victor G and Hu Chengcheng
Drifting Markov Models with Polynomial Drift and Applications to DNA Sequences pp. 1-45 Downloads
Vergne Nicolas
A Composite-Conditional-Likelihood Approach for Gene Mapping Based on Linkage Disequilibrium in Windows of Marker Loci pp. 1-33 Downloads
Larribe Fabrice and Lessard Sabin
Semi-Parametric Differential Expression Analysis via Partial Mixture Estimation pp. 1-29 Downloads
Rossell David, Guerra Rudy and Scott Clayton
Quantifying the Association between Gene Expressions and DNA-Markers by Penalized Canonical Correlation Analysis pp. 1-29 Downloads
Waaijenborg Sandra, Verselewel de Witt Hamer Philip C. and Zwinderman Aeilko H
Self-Organizing Maps with Statistical Phase Synchronization (SOMPS) for Analyzing Cell Cycle-Specific Gene Expression Data pp. 1-34 Downloads
Kim Chang Sik
Comparing the Characteristics of Gene Expression Profiles Derived by Univariate and Multivariate Classification Methods pp. 1-34 Downloads
Zucknick Manuela, Richardson Sylvia and Stronach Euan A
Re-Cracking the Nucleosome Positioning Code pp. 1-24 Downloads
Segal Mark R
Data Distribution of Short Oligonucleotide Expression Arrays and Its Application to the Construction of a Generalized Intellectual Framework pp. 1-24 Downloads
Konishi Tomokazu
Phenotyping Genetic Diseases Using an Extension of µ-Scores for Multivariate Data pp. 1-20 Downloads
Morales José F., Song Tingting, Auerbach Arleen D. and Knut Wittkowski
A Comparison of Normalization Techniques for MicroRNA Microarray Data pp. 1-20 Downloads
Rao Youlan, Lee Yoonkyung, Jarjoura David, Ruppert Amy S, Liu Chang-gong, Hsu Jason C and Hagan John P
Coalescent Time Distributions in Trees of Arbitrary Size pp. 1-30 Downloads
Efromovich Sam and Salter Kubatko Laura
Supervised Distance Matrices pp. 1-30 Downloads
Pollard Katherine S. and J. van der Laan Mark
Detecting Two-Locus Gene-Gene Effects Using Monotonisation of the Penetrance Matrix pp. 1-16 Downloads
Henningsson Susanne and Nilsson Staffan I
Adaptive Choice of the Number of Bootstrap Samples in Large Scale Multiple Testing pp. 1-21 Downloads
Guo Wenge and Peddada Shyamal
Predicting Protein Concentrations with ELISA Microarray Assays, Monotonic Splines and Monte Carlo Simulation pp. 1-21 Downloads
Daly Don Simone, Anderson Kevin K, White Amanda M, Gonzalez Rachel M, Varnum Susan M and Zangar Richard C
A Sparse PLS for Variable Selection when Integrating Omics Data pp. 1-32 Downloads
Lê Cao Kim-Anh, Rossouw Debra, Robert-Granié Christèle and Besse Philippe
Nonparametric Functional Mapping of Quantitative Trait Loci Underlying Programmed Cell Death pp. 1-32 Downloads
Cui Yuehua, Wu Rongling, Casella George and Zhu Jun
Adapting Prediction Error Estimates for Biased Complexity Selection in High-Dimensional Bootstrap Samples pp. 1-28 Downloads
Binder Harald and Schumacher Martin
Structure Learning in Nested Effects Models pp. 1-28 Downloads
Tresch Achim and Markowetz Florian
Collapsing SNP Genotypes in Case-Control Genome-Wide Association Studies Increases the Type I Error Rate and Power pp. 1-17 Downloads
Matthews Abigail G, Haynes Chad, Liu Chang and Ott Jurg
Pattern Classification of Phylogeny Signals pp. 1-22 Downloads
Shi Xiaofei, Gu Hong and Field Chris
Calculating Confidence Intervals for Prediction Error in Microarray Classification Using Resampling pp. 1-22 Downloads
Jiang Wenyu, Varma Sudhir and Simon Richard
Modeling DNA Methylation in a Population of Cancer Cells pp. 1-23 Downloads
Siegmund Kimberly D., Marjoram Paul and Shibata Darryl
Statistical Methods in Integrative Analysis for Gene Regulatory Modules pp. 1-23 Downloads
Zeng Lingmin, Wu Jing and Xie Jun
The Estimator of the Optimal Measure of Allelic Association: Mean, Variance and Probability Distribution When the Sample Size Tends to Infinity pp. 1-25 Downloads
Mangin Brigitte, Garnier-Géré Pauline and Cierco-Ayrolles Christine
Estimating Number of Clusters Based on a General Similarity Matrix with Application to Microarray Data pp. 1-25 Downloads
Fallah Shafagh, Tritchler David and Beyene Joseph
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